Whole-Exome Sequencing Identifies Genetic Variants for Severe Adolescent Idiopathic Scoliosis in a Taiwanese Population

被引:2
|
作者
Lin, Min-Rou [1 ]
Chou, Po-Hsin [2 ,3 ]
Huang, Kuei-Jung [1 ]
Ting, Jafit [1 ]
Liu, Chia-Ying [1 ]
Chou, Wan-Hsuan [1 ]
Lin, Gan-Hong [4 ]
Chang, Jan-Gowth [5 ,6 ]
Ikegawa, Shiro [1 ,7 ]
Wang, Shih-Tien [2 ,3 ,8 ]
Chang, Wei-Chiao [1 ,4 ,9 ]
机构
[1] Taipei Med Univ, Sch Pharm, Dept Clin Pharm, Taipei 110, Taiwan
[2] Taipei Vet Gen Hosp, Dept Orthoped & Traumatol, Taipei 112, Taiwan
[3] Natl Yang Ming Chiao Tung Univ, Sch Med, Taipei 112, Taiwan
[4] Taipei Med Univ, Sch Pharm, Master Program Clin Genom & Prote, Taipei 110, Taiwan
[5] China Med Univ Hosp, Ctr Precis Med, Taichung 404, Taiwan
[6] China Med Univ, Sch Med, Taichung 404, Taiwan
[7] RIKEN, RIKEN Ctr Integrat Med Sci IMS, Lab Bone & Joint Dis, Tokyo 1088639, Japan
[8] Kinmen Hosp, Minist Hlth & Welf, Kinmen 891, Taiwan
[9] Taipei Med Univ, Wan Fang Hosp, Integrat Res Ctr Crit Care, Taipei 116, Taiwan
来源
JOURNAL OF PERSONALIZED MEDICINE | 2023年 / 13卷 / 01期
关键词
adolescent idiopathic scoliosis; whole-exome sequencing; TTN; CLCN1; SOX8; RARE VARIANTS; SOX8;
D O I
10.3390/jpm13010032
中图分类号
R19 [保健组织与事业(卫生事业管理)];
学科分类号
摘要
Adolescent idiopathic scoliosis (AIS) is a three-dimensional spinal curvature deformity that appears in the adolescent period. In this study, we performed whole-exome sequencing on 11 unrelated Taiwanese patients with a Cobb's angle greater than 40 degrees. Our results identified more than 200 potential pathogenic rare variants, however, most of which were carried only by one individual. By in silico pathogenicity annotation studies, we found that TTN, CLCN1, and SOX8 were the most important genes, as multiple pathogenic variants were within these genes. Furthermore, biological functional annotation indicated critical roles of these AIS candidate genes in the skeletal muscle. Importantly, a pathogenic variant on SOX8 was shared by over 35% of the patients. These results highlighted TTN, CLCN1, and SOX8 as the most likely susceptibility genes for severe AIS.
引用
收藏
页数:13
相关论文
共 50 条
  • [21] Whole-exome sequencing identifies rare genetic variants that may contribute to isoniazid (INH)-induced liver injury
    Urban, Thomas J.
    Shianna, Kevin
    Barnhart, Huiman X.
    Chalasani, Naga P.
    Fontana, Robert J.
    Serrano, Jose
    Stolz, Andrew
    Goldstein, David B.
    Watkins, Paul B.
    HEPATOLOGY, 2012, 56 : 593A - 594A
  • [22] Whole-Exome Sequencing in Multiplex Families Identifies Novel Rare Variants in Multiple Sclerosis
    Haines, Jonathan
    Beecham, Ashley
    McCauley, Jacob
    Hadjixenofontos, Athena
    Whitehead, Patrice
    Konidari, Ioanna
    Aviram, Anat
    Pasco, Yuslin
    Hauser, Stephen
    Oksenberg, Jorge
    Hedges, Dale
    Vance, Jeffery
    Pericak-Vance, Margaret
    NEUROLOGY, 2013, 80
  • [23] Whole-Exome Sequencing Identifies Likely Deleterious Variants in 50 Families with Spina Bifida
    Wang, Chunyan
    Seltzsam, Steve
    Zheng, Bixia
    Wu, Chen-Han W.
    Frank, Camille H. Nicolas
    Yousef, Kirollos
    Mann, Nina
    Schneider, Sophia
    Schierbaum, Luca M.
    Pantel, Dalia
    Kari, Jameela A.
    El Desoky, Sherif M.
    Eid, Loai A.
    Tasic, Velibor
    Shril, Shirlee
    Baum, Michelle A.
    Estrada, Carlos R.
    Hildebrandt, Friedhelm
    JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY, 2021, 32 (10): : 429 - 429
  • [24] Whole-exome sequencing analysis identifies novel variants associated with Kawasaki disease susceptibility
    Zhang, Xing
    Sun, Ying
    Meng, Lijuan
    Ye, Caixia
    Han, Huifeng
    Zhang, Tiesong
    Feng, Yue
    Li, Jianxiao
    Duan, Lifen
    Chen, Yanfei
    PEDIATRIC RHEUMATOLOGY, 2023, 21 (01)
  • [25] Whole-exome sequencing analysis identifies novel variants associated with Kawasaki disease susceptibility
    Xing Zhang
    Ying Sun
    Lijuan Meng
    Caixia Ye
    Huifeng Han
    Tiesong Zhang
    Yue Feng
    Jianxiao Li
    Lifen Duan
    Yanfei Chen
    Pediatric Rheumatology, 21
  • [26] Identification of potential genetic causal variants for rheumatoid arthritis by whole-exome sequencing
    Li, Ying
    Leung, Elaine Lai-Han
    Pan, Hudan
    Yao, Xiaojun
    Huang, Qingchun
    Wu, Min
    Xu, Ting
    Wang, Yuwei
    Cai, Jun
    Li, Runze
    Liu, Wei
    Liu, Liang
    ONCOTARGET, 2017, 8 (67) : 111119 - 111129
  • [27] Fibromuscular dysplasia: Identifying potential genetic causal variants by whole-exome sequencing
    Vanhoutte, E.
    Claes, G.
    Krapels, I.
    de Leeuw, P.
    Brunner, H.
    Kroon, A.
    EUROPEAN JOURNAL OF HUMAN GENETICS, 2019, 27 : 148 - 149
  • [28] Whole-exome sequencing reveals genetic variants that may play a role in neurocytomas
    Sapna Khowal
    Dongyun Zhang
    William H Yong
    Anthony P. Heaney
    Journal of Neuro-Oncology, 2024, 166 : 471 - 483
  • [29] Whole-exome sequencing reveals genetic variants that may play a role in neurocytomas
    Khowal, Sapna
    Zhang, Dongyun
    Yong, William H.
    Heaney, Anthony P.
    JOURNAL OF NEURO-ONCOLOGY, 2024, 166 (03) : 471 - 483
  • [30] Whole-exome sequencing of a large Chinese azoospermia and severe oligospermia cohort identifies novel infertility causative variants and genes
    Chen, Shitao
    Wang, Guishuan
    Zheng, Xiaoguo
    Ge, Shunna
    Dai, Yubing
    Ping, Ping
    Chen, Xiangfeng
    Liu, Guihua
    Zhang, Jing
    Yang, Yang
    Zhang, Xinzong
    Zhong, An
    Zhu, Yongtong
    Chu, Qingjun
    Huang, Yonghan
    Zhang, Yong
    Shen, Changli
    Yuan, Yiming
    Yuan, Qilong
    Pei, Xiuying
    Cheng, C. Yan
    Sun, Fei
    HUMAN MOLECULAR GENETICS, 2020, 29 (14) : 2451 - 2459