A Riemannian stochastic representation for quantifying model uncertainties in molecular dynamics simulations

被引:5
|
作者
Zhang, Hao [1 ]
Guilleminot, Johann [1 ]
机构
[1] Duke Univ, Dept Civil & Environm Engn, Durham, NC 27708 USA
基金
美国国家科学基金会;
关键词
Model uncertainty; Molecular dynamics; Reduced-order modeling; Stiefel manifold; Uncertainty quantification; POTENTIAL FUNCTIONS; STIEFEL MANIFOLD; FORCE-FIELD; QUANTIFICATION; PROPAGATION; FRAMEWORK; CHAOS; WATER;
D O I
10.1016/j.cma.2022.115702
中图分类号
T [工业技术];
学科分类号
08 ;
摘要
A Riemannian stochastic representation of model uncertainties in molecular dynamics is proposed. The approach relies on a reduced-order model, the projection basis of which is randomized on a subset of the Stiefel manifold characterized by a set of linear constraints defining, e.g. , Dirichlet boundary conditions in the physical space. We first show that these constraints are, indeed, preserved through Riemannian pushforward and pullback actions to, and from, the tangent space to the manifold at any admissible point. This fundamental property is subsequently exploited to derive a probabilistic model that leverages the multimodel nature of the atomistic setting. The proposed formulation offers several advantages, including a simple and interpretable low-dimensional parameterization, the ability to constraint the Frechet mean on the manifold, and ease of implementation and propagation. The relevance of the proposed modeling framework is finally demonstrated on various applications including multiscale simulations on graphene-based systems.(c) 2022 Elsevier B.V. All rights reserved.
引用
收藏
页数:23
相关论文
共 50 条
  • [31] QUANTIFYING THE THERMAL ACCOMMODATION COEFFICIENT FOR IRON SURFACES USING MOLECULAR DYNAMICS SIMULATIONS
    Sipkens, T. A.
    Daun, K. J.
    Titantah, J. T.
    Karttunen, M.
    PROCEEDINGS OF THE ASME INTERNATIONAL MECHANICAL ENGINEERING CONGRESS AND EXPOSITION, 2015, VOL 8B, 2016,
  • [32] Quantifying uncertainties in primordial nucleosynthesis without Monte Carlo simulations
    Fiorentini, G
    Lisi, E
    Sarkar, S
    Villante, FL
    PHYSICAL REVIEW D, 1998, 58 (06):
  • [33] Building energy models: Quantifying uncertainties due to stochastic processes
    Ahuja, Sunil
    Peles, Slaven
    2013 IEEE 52ND ANNUAL CONFERENCE ON DECISION AND CONTROL (CDC), 2013, : 4808 - 4814
  • [34] Quantifying inflow uncertainties in RANS simulations of urban pollutant dispersion
    Garcia-Sanchez, C.
    Van Tendeloo, G.
    Gorle, C.
    ATMOSPHERIC ENVIRONMENT, 2017, 161 : 263 - 273
  • [35] Quantifying uncertainties in direct numerical simulations of a turbulent channel flow
    O'Connor, Joseph
    Laizet, Sylvain
    Wynn, Andrew
    Edeling, Wouter
    Coveney, Peter V.
    COMPUTERS & FLUIDS, 2024, 268
  • [36] Stochastic dynamics of molecular systems and upconversion materials from experiments and simulations
    Oliveira, Guilherme
    Barja, Beatriz
    Aparecido Sigoli, Fernando
    Nome, Rene
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2019, 258
  • [37] QUANTIFYING UNCERTAINTIES IN PHENOMENOLOGICAL MODEL OF TWO-DIMENSIONAL VIV USING MULTIVARIATE MONTE CARLO SIMULATIONS
    Tagliaferri, Francesca
    Srinil, Narakorn
    PROCEEDINGS OF THE ASME 36TH INTERNATIONAL CONFERENCE ON OCEAN, OFFSHORE AND ARCTIC ENGINEERING, 2017, VOL 2, 2017,
  • [39] Constant temperature molecular dynamics simulations by means of a stochastic collision model .2. The harmonic oscillator - Comment
    Sholl, DS
    Fichthorn, KA
    JOURNAL OF CHEMICAL PHYSICS, 1997, 106 (04): : 1646 - 1647
  • [40] DIFFMD: A Geometric Diffusion Model for Molecular Dynamics Simulations
    Wu, Fang
    Li, Stan Z.
    THIRTY-SEVENTH AAAI CONFERENCE ON ARTIFICIAL INTELLIGENCE, VOL 37 NO 4, 2023, : 5321 - 5329