Identification of a novel macrophage-related prognostic signature in colorectal cancer

被引:1
|
作者
Lin, Dongfa [1 ,2 ,3 ]
Zheng, Tingjin [4 ]
Huang, Shangyuan [5 ]
Liu, Rui [3 ]
Guan, Shuwen [1 ,2 ,3 ]
Zhang, Zhishan [4 ]
机构
[1] Jilin Univ, Sch Life Sci, Key Lab Mol Enzymol & Engn, Minist Educ, Changchun 130012, Peoples R China
[2] Jilin Univ, Engn Lab AIDS Vaccine, Changchun 130012, Peoples R China
[3] Jilin Univ, Sch Life Sci, Changchun 130012, Peoples R China
[4] Fujian Med Univ, Quanzhou Hosp 1, Dept Clin Lab, 248 East St, Quanzhou 362000, Fujian, Peoples R China
[5] Shanghai Jiao Tong Univ, Sch Life Sci & Biotechnol, Sheng Yushou Ctr Cell Biol & Immunol, Lab Mol Neurobiol,Dept Genet & Dev Biol, 800 Dongchuan Rd, Shanghai 200240, Peoples R China
关键词
TUMOR-ASSOCIATED MACROPHAGES; NECROSIS-FACTOR; COLON-CANCER; EXPRESSION; METALLOPROTEASE; DISINTEGRIN; MUTATIONS; REGULATOR; PACKAGE; MARKERS;
D O I
10.1038/s41598-024-53207-9
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Colorectal cancer (CRC) is one of the most prevalent and deadliest illnesses all around the world. Growing proofs demonstrate that tumor-associated macrophages (TAMs) are of critical importance in CRC pathogenesis, but their mechanisms remain yet unknown. The current research was designed to recognize underlying biomarkers associated with TAMs in CRC. We screened macrophage-related gene modules through WGCNA, selected hub genes utilizing the LASSO algorithm and COX regression, and established a model. External validation was performed by expression analysis using datasets GSE14333, GSE74602, and GSE87211. After validating the bioinformatics results using real-time quantitative reverse transcription PCR, we identified SPP1, C5AR1, MMP3, TIMP1, ADAM8 as potential biomarkers associated with macrophages in CRC.
引用
收藏
页数:25
相关论文
共 50 条
  • [31] Identification of prognostic immune-related gene signature associated with tumor microenvironment of colorectal cancer
    Wang, Yuanyuan
    Li, Wei
    Jin, Xiaojing
    Jiang, Xia
    Guo, Shang
    Xu, Fei
    Su, Xingkai
    Wang, Guiqi
    Zhao, Zengren
    Gu, Xiaosong
    [J]. BMC CANCER, 2021, 21 (01)
  • [32] Identification of prognostic immune-related lncRNA signature predicting the overall survival for colorectal cancer
    Jianxin Li
    Ting Han
    Xin Wang
    Yinchun Wang
    Xuan Chen
    Wangsheng Chen
    Qingqiang Yang
    [J]. Scientific Reports, 13
  • [33] Identification and validation of a prognostic signature based on six immune-related genes for colorectal cancer
    Zheng, Lifeng
    Xu, Ziyu
    Zhang, Wulou
    Lin, Hao
    Zhang, Yepeng
    Zhou, Shu
    Liu, Zonghang
    Gu, Xi
    [J]. DISCOVER ONCOLOGY, 2024, 15 (01)
  • [34] Identification of prognostic immune-related lncRNA signature predicting the overall survival for colorectal cancer
    Li, Jianxin
    Han, Ting
    Wang, Xin
    Wang, Yinchun
    Chen, Xuan
    Chen, Wangsheng
    Yang, Qingqiang
    [J]. SCIENTIFIC REPORTS, 2023, 13 (01)
  • [35] Identification of prognostic immune-related gene signature associated with tumor microenvironment of colorectal cancer
    Yuanyuan Wang
    Wei Li
    Xiaojing Jin
    Xia Jiang
    Shang Guo
    Fei Xu
    Xingkai Su
    Guiqi Wang
    Zengren Zhao
    Xiaosong Gu
    [J]. BMC Cancer, 21
  • [36] Identification and Clinical Validation of a Novel 4 Gene-Signature with Prognostic Utility in Colorectal Cancer
    Ahluwalia, Pankaj
    Mondal, Ashis K.
    Bloomer, Chance
    Fulzele, Sadanand
    Jones, Kimya
    Ananth, Sudha
    Gahlay, Gagandeep K.
    Heneidi, Saleh
    Rojiani, Amyn M.
    Kota, Vamsi
    Kolhe, Ravindra
    [J]. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2019, 20 (15)
  • [37] A prognostic fibroblast-related risk signature in colorectal cancer
    Xu, Hao
    Pan, Yisheng
    [J]. AGING-US, 2021, 13 (21): : 24251 - 24270
  • [38] Genome-Wide Identification of a Novel Autophagy-Related Signature for Colorectal Cancer
    Huang, Zhi
    Liu, Jie
    Luo, Liang
    Sheng, Pan
    Wang, Biao
    Zhang, Jun
    Peng, Sha-sha
    [J]. DOSE-RESPONSE, 2019, 17 (04):
  • [39] An M0 macrophage-related prognostic model for hepatocellular carcinoma
    Zhang, Yiya
    Zou, Ju
    Chen, Ruochan
    [J]. BMC CANCER, 2022, 22 (01)
  • [40] A novel prognostic model based on urea cycle-related gene signature for colorectal cancer
    Guo, Haiyang
    Wang, Yuanbiao
    Gou, Lei
    Wang, Xiaobo
    Tang, Yong
    Wang, Xianfei
    [J]. FRONTIERS IN SURGERY, 2022, 9