The genome of the egg parasitoid Trissolcus basalis (Wollaston) (Hymenoptera, Scelionidae), a model organism and biocontrol agent of stink bugs

被引:1
|
作者
Lahey, Zachary [1 ,2 ]
Chen, Huayan [3 ,4 ]
Dowton, Mark [5 ]
Austin, Andrew D. [6 ]
Johnson, Norman F. [1 ,3 ]
机构
[1] Ohio State Univ, Dept Evolut Ecol & Organismal Biol, Museum Biol Divers, Columbus, OH 43212 USA
[2] USDA, Agr Res Serv, US Vegetable Lab, Charleston, SC 29414 USA
[3] Ohio State Univ, Dept Entomol, Columbus, OH 43212 USA
[4] Chinese Acad Sci, Key Lab Plant Resources Conservat & Sustainable Ut, South China Bot Garden, Guangzhou 510650, Peoples R China
[5] Univ Wollongong, Ctr Med & Mol Biosci, Sch Biol Sci, Wollongong, NSW 2522, Australia
[6] Univ Adelaide, Environm Inst, Sch Biol Sci, Adelaide, SA 5005, Australia
基金
中国国家自然科学基金; 美国国家科学基金会;
关键词
assembly; biological control; insect genomics; nanopore; Telenominae; ODORANT-BINDING-PROTEINS; NEZARA-VIRIDULA; SUPERFAMILY PLATYGASTROIDEA; HOST; KAIROMONE; GENE; IDENTIFICATION; EVOLUTION; RESOURCE; VOLATILE;
D O I
10.3897/jhr.95.97654
中图分类号
Q96 [昆虫学];
学科分类号
摘要
Trissolcus basalis (Wollaston) is a minute parasitic wasp that develops in the eggs of stink bugs. Over the past 30 years, Tr. basalis has become a model organism for studying host finding, patch defense behavior, and chemical ecology. As an entry point to better understand the molecular basis of these factors, in ad-dition to filling a critical gap in the genomic resources available for parasitic Hymenoptera, we sequenced and assembled the genome of Tr. basalis using short (454, Illumina) and long read (Oxford Nanopore) sequencing technologies. The three sequencing methods produced 32 million reads (4.10 Gb; 27.9x), which were assembled into 7,586 scaffolds. The 147 Mb (N50: 42.8 kb) assembly contains complete se-quences for 93.1% of the insect BUSCO dataset, and an extensive annotation protocol resulted in 14,158 protein-coding gene models, 12,197 (86%) of which had a blast hit in GenBank. Repetitive elements comprised 13.8% of the genome, and a phylogenomic analysis recovered Tr. basalis as sister to Chalci-doidea, a result in line with other studies. We identified 174 rapidly evolving gene families in Tr. basalis, including olfactory receptors and pheromone/general odorant binding proteins. These genetic elements are an obligatory portion of the parasitoid-host relationship, and the draft genome of Tr. basalis has and will continue to be useful in elucidating these relationships at finer resolution.
引用
收藏
页码:31 / 44
页数:14
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