Cost-effective, high-yield production of Pyrobaculum calidifontis DNA polymerase for PCR application

被引:0
|
作者
Maseh, Kashif [1 ]
Ali, Syed Farhat [1 ]
Ahmad, Shazeel [2 ]
Rashid, Naeem [2 ]
机构
[1] Forman Christian Coll, KAM Sch Life Sci, Lahore, Pakistan
[2] Univ Punjab, Sch Biol Sci, Lahore, Pakistan
来源
PREPARATIVE BIOCHEMISTRY & BIOTECHNOLOGY | 2023年 / 53卷 / 06期
关键词
DNA polymerase; expression optimization; polymerase chain reaction (PCR); purification; Pyrobaculum calidifontis; stability; ESCHERICHIA-COLI; PROTEIN; EXPRESSION; OPTIMIZATION; STRATEGIES; INDUCTION; DIVERSITY; EVOLUTION;
D O I
10.1080/10826068.2022.2137731
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Polymerase Chain Reaction (PCR) is widely used for cloning, genetic engineering, mutagenesis, detection and diagnosis. A thermostable DNA polymerase is required for PCR. Here we describe low-cost and high-recovery production of Pyrobaculum calidifontis DNA polymerase (Pca-Pol). The gene was cloned in pET-28a and expressed in Escherichia coli BL21CodonPlus. Gene expression conditions were optimized. Eventually, gene expression was induced with 0.1 mM IPTG for 3 hours at 37 degrees C. Recombinant Pca-Pol produced was purified to homogeneity by immobilized metal-ion affinity chromatography yielding around 9000 U of Pca-Pol per liter of the culture with a recovery of 92%. Stability and PCR amplification efficiency of Pca-Pol was tested under various storage conditions with highest efficiency in 25 mM Tris-Cl buffer (pH 8.5) containing 0.1% Tween 20, 0.2 mg/mL BSA and 20% glycerol. Under this condition, no loss in PCR activity of Pca-Pol was observed, even after one year of storage. Repeated freeze-thaw, however, deteriorated enzyme activity of Pca-Pol. 55% PCR amplification activity retained after 7 prolong freeze-thaw cycles (freezing overnight at -20 degrees C and thawing for 45 minutes at 28 degrees C). Purified Pca-Pol possessed 3 '-5 ' exonuclease (proofreading) activity and is expected to have greater fidelity as compared to Taq polymerase which does not have proofreading activity.
引用
收藏
页码:704 / 711
页数:8
相关论文
共 50 条
  • [21] High-throughput, cost-effective verification of structural DNA assembly
    Dharmadi, Yandi
    Patel, Kedar
    Shapland, Elaine
    Hollis, Daniel
    Slaby, Todd
    Klinkner, Nicole
    Dean, Jed
    Chandran, Sunil S.
    NUCLEIC ACIDS RESEARCH, 2014, 42 (04) : e22
  • [22] HIGH-YIELD PLASMID DNA PRODUCTION, 20-MG IN 2 HOURS
    LIPPMAN, D
    SKLAR, M
    DANA, R
    SAGHBINI, M
    CLINICAL CHEMISTRY, 1994, 40 (12) : 2341 - 2341
  • [23] Droplet digital PCR is a cost-effective method for analyzing long cell-free DNA in maternal plasma: Application in preeclampsia
    Gai, Wanxia
    Yu, Stephanie C. Y.
    Chan, W. T. Charlotte
    Peng, Wenlei
    Lau, So Ling
    Leung, Tak Y.
    Jiang, Peiyong
    Chan, K. C. Allen
    Lo, Y. M. Dennis
    PRENATAL DIAGNOSIS, 2023, : 1385 - 1393
  • [24] RSAD2 Is an Effective Target for High-Yield Vaccine Production in MDCK Cells
    Qiao, Zilin
    Liao, Yuejiao
    Pei, Mengyuan
    Qiu, Zhenyu
    Liu, Zhenbin
    Jin, Dongwu
    Zhang, Jiayou
    Ma, Zhongren
    Yang, Xiaoming
    VIRUSES-BASEL, 2022, 14 (11):
  • [25] Cloning, expression, and characterization of a family B-type DNA polymerase from the hyperthermophilic crenarchaeon Pyrobaculum arsenaticum and its application to PCR
    Shin, HJ
    Lee, SK
    Choi, JJ
    Koh, S
    Lee, JH
    Kim, SJ
    Kwon, ST
    JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY, 2005, 15 (06) : 1359 - 1367
  • [26] A Simple and Cost-Effective DNA Preparation Method Suitable for High-Throughput PCR Quantification of Hepatitis B Virus Genomes
    Jo, Eunji
    Yang, Jaewon
    Koenig, Alexander
    Yoon, Seung Kew
    Windisch, Marc P.
    VIRUSES-BASEL, 2020, 12 (09):
  • [27] Platelet Rich Plasma: Cost-effective & simple technique with high yield platelet count
    Kashif, Ambreen
    Ghazanfer, Sidra
    Moin, Saira
    Ta, Sadia
    Zahraa, Fatima
    RAWAL MEDICAL JOURNAL, 2021, 46 (02): : 266 - 269
  • [28] Critical parameters in cost-effective alkaline extraction for high protein yield from leaves
    Zhang, Chen
    Sanders, Johan P. M.
    Bruins, Marieke E.
    BIOMASS & BIOENERGY, 2014, 67 : 466 - 472
  • [29] Multiplex polymerase chain reaction with DNA pooling: a cost-effective strategy of genotyping rare blood types
    He, Y-L
    Gao, H-H
    Ye, L-Y
    Guo, Z-H
    Wang, P.
    Zhu, Z-Y
    TRANSFUSION MEDICINE, 2013, 23 (01) : 42 - 47
  • [30] Cost-Effective Production of High-Property Titanium Alloy from Powder
    Singh, Ajit Pal
    Yang, Fei
    Torrens, Rob
    Gabbitas, Brian
    Bolzoni, Leandro
    THERMEC 2018: 10TH INTERNATIONAL CONFERENCE ON PROCESSING AND MANUFACTURING OF ADVANCED MATERIALS, 2018, 941 : 1088 - 1094