Solving the stochastic dynamics of population growth

被引:4
|
作者
Marrec, Loic [1 ,2 ]
Bank, Claudia [1 ,2 ]
Bertrand, Thibault [3 ]
机构
[1] Univ Bern, Inst Okol & Evolut, Baltzerstr 6, CH-3012 Bern, Switzerland
[2] Swiss Inst Bioinformat, Lausanne, Switzerland
[3] Imperial Coll London, Dept Math, London, England
来源
ECOLOGY AND EVOLUTION | 2023年 / 13卷 / 08期
基金
欧盟地平线“2020”; 瑞士国家科学基金会;
关键词
community dynamics; fixation probability; master equation; moment closure approximation; Population dynamics; MOMENT CLOSURE; VARIABLE ENVIRONMENTS; CELL-PROLIFERATION; MODELS; BOTTLENECKS; PERSISTENCE; IMPACT;
D O I
10.1002/ece3.10295
中图分类号
Q14 [生态学(生物生态学)];
学科分类号
071012 ; 0713 ;
摘要
Population growth is a fundamental process in ecology and evolution. The population size dynamics during growth are often described by deterministic equations derived from kinetic models. Here, we simulate several population growth models and compare the size averaged over many stochastic realizations with the deterministic predictions. We show that these deterministic equations are generically bad predictors of the average stochastic population dynamics. Specifically, deterministic predictions overestimate the simulated population sizes, especially those of populations starting with a small number of individuals. Describing population growth as a stochastic birth process, we prove that the discrepancy between deterministic predictions and simulated data is due to unclosed-moment dynamics. In other words, the deterministic approach does not consider the variability of birth times, which is particularly important with small population sizes. We show that some moment-closure approximations describe the growth dynamics better than the deterministic prediction. However, they do not reduce the error satisfactorily and only apply to some population growth models. We explicitly solve the stochastic growth dynamics, and our solution applies to any population growth model. We show that our solution exactly quantifies the dynamics of a community composed of different strains and correctly predicts the fixation probability of a strain in a serial dilution experiment. Our work sets the foundations for a more faithful modeling of community and population dynamics. It will allow the development of new tools for a more accurate analysis of experimental and empirical results, including the inference of important growth parameters.
引用
收藏
页数:20
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