NanoLocz: Image Analysis Platform for AFM, High-Speed AFM, and Localization AFM

被引:2
|
作者
Heath, George R. [1 ,2 ]
Micklethwaite, Emily [1 ]
Storer, Tabitha M. [1 ]
机构
[1] Univ Leeds, Bragg Ctr Mat Res, Sch Phys & Astron, Leeds LS2 9JT, England
[2] Univ Leeds, Astbury Ctr Struct Mol Biol, Sch Biomed Sci, Leeds LS2 9JT, England
来源
SMALL METHODS | 2024年
基金
英国工程与自然科学研究理事会;
关键词
AFM; DNA origami; high-speed AFM; image processing; simulation AFM; structural biology; OPEN-SOURCE SOFTWARE; MICROSCOPY; BACTERIORHODOPSIN;
D O I
10.1002/smtd.202301766
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Atomic Force Microscopy (AFM), High-Speed AFM (HS-AFM) simulation AFM, and Localization AFM (LAFM) enable the study of molecules and surfaces with increasingly higher spatiotemporal resolution. However, effective and rapid analysis of the images and movies produced by these techniques can be challenging, often requiring the use of multiple image processing software applications and scripts. Here, NanoLocz, an open-source solution that offers advanced analysis capabilities for the AFM community, is presented. Integration and continued development of AFM analysis tools is essential to improve access to data, increase throughput, and open new analysis opportunities. NanoLocz efficiently leverages the rich data AFM has to offer by incorporating and combining existing and newly developed analysis methods for AFM, HS-AFM, simulation AFM, and LAFM seamlessly. It facilitates and streamlines AFM analysis workflows from import of raw data, through to various analysis workflows. Here, the study demonstrates the capabilities of NanoLocz and the new methods it enables including single-molecule LAFM, time-resolved LAFM, and simulation LAFM. NanoLocz, an open-source solution that addresses the challenge of analyzing Atomic Force Microscopy (AFM), High-Speed AFM (HS-AFM), Simulation AFM, and Localization AFM (LAFM) data. This platform streamlines workflows, improving accessibility, throughput, and unlocking new analysis methods. NanoLocz seamlessly integrates existing and novel methods, here the study demonstrates new capabilities in single-molecule LAFM, time-resolved LAFM, and simulation LAFM. image
引用
收藏
页数:9
相关论文
共 50 条
  • [1] High-speed AFM imaging
    Ando, Toshio
    [J]. CURRENT OPINION IN STRUCTURAL BIOLOGY, 2014, 28 : 63 - 68
  • [2] High-Speed AFM with a Light Touch
    Miles, Mervyn
    Picco, Loren M.
    Harniman, Robert L.
    Phillips, David B.
    Payton, Oliver D.
    Ulcinas, Arturas
    Antognozzi, Massimo
    Engledew, David J.
    Vicary, James
    Gibson, Graham
    Bowman, Richard
    Padgett, Miles J.
    Carberry, David M.
    [J]. BIOPHYSICAL JOURNAL, 2013, 104 (02) : 386A - 386A
  • [3] Techniques Developed for High-Speed AFM
    Ando, Toshio
    [J]. CONTROL TECHNOLOGIES FOR EMERGING MICRO AND NANOSCALE SYSTEMS, 2011, 413 : 1 - 16
  • [4] High-speed AFM of human chromosomes in liquid
    Picco, L. M.
    Dunton, P. G.
    Ulcinas, A.
    Engledew, D. J.
    Hoshi, O.
    Ushiki, T.
    Miles, M. J.
    [J]. NANOTECHNOLOGY, 2008, 19 (38)
  • [5] Error mapping of high-speed AFM systems
    Klapetek, Petr
    Picco, Loren
    Payton, Oliver
    Yacoot, Andrew
    Miles, Mervyn
    [J]. MEASUREMENT SCIENCE AND TECHNOLOGY, 2013, 24 (02)
  • [6] The high-speed AFM and motion pictures.
    Ando, T
    Maruyama, D
    Saito, K
    Toda, T
    [J]. BIOPHYSICAL JOURNAL, 2001, 80 (01) : 303A - 303A
  • [7] High-Speed AFM and Applications to Biomolecular Systems
    Ando, Toshio
    Uchihashi, Takayuki
    Kodera, Noriyuki
    [J]. ANNUAL REVIEW OF BIOPHYSICS, VOL 42, 2013, 42 : 393 - 414
  • [8] High-speed metrological large range AFM
    Dai, Gaoliang
    Zhu, Fan
    Fluegge, Jens
    [J]. MEASUREMENT SCIENCE and TECHNOLOGY, 2015, 26 (09)
  • [9] 6.6 MHz silicon AFM cantilever for high-speed readout in AFM-based recording
    Hosaka, S
    Etoh, K
    Kikukawa, A
    Koyanagi, H
    Itoh, K
    [J]. MICROELECTRONIC ENGINEERING, 1999, 46 (1-4) : 109 - 112
  • [10] The hierarchical assembly of septins revealed by high-speed AFM
    Jiao, Fang
    Cannon, Kevin S.
    Lin, Yi-Chih
    Gladfelter, Amy S.
    Scheuring, Simon
    [J]. NATURE COMMUNICATIONS, 2020, 11 (01)