The mitogenome data of Holothuria (Mertensiothuria) leucospilota (Brandt,1835) from Malaysia

被引:0
|
作者
Badrulhisham, Nur Sabrina [1 ]
Solehin, Siti Najihah [1 ]
Han, Ming Gan [2 ]
Jahari, Puteri Nur Syahzanani [3 ]
Salleh, Faezah Mohd [3 ]
Rehan, Aisyah Mohamed [4 ]
Kamarudin, Kamarul Rahim [1 ]
机构
[1] Univ Tun Hussein Onn Malaysia UTHM, Fac Appl Sci & Technol FAST, Ctr Res Sustainable Uses Nat Resources SUNR, Pagoh Campus, Muar 84600, Johor Darul Taz, Malaysia
[2] Sunway Univ, Dept Biol Sci, Bandar Sunway 47500, PetalingJay, Malaysia
[3] Univ Teknol Malaysia, Fac Sci, Dept Biosci, Johor Baharu 81310, Johor, Malaysia
[4] Univ Tun Hussein Onn Malaysia UTHM, Fac Engn Technol FTK, Dept Chem Engn Technol, Pagoh Campus, Muar 84600, Johor Darul Taz, Malaysia
来源
DATA IN BRIEF | 2023年 / 47卷
关键词
Holothuria leucospilota; Mitochondrial genome; Phylogeny; Sea cucumber; Malaysia; COMPLETE MITOCHONDRIAL GENOME; MULTIPLE SEQUENCE ALIGNMENT;
D O I
10.1016/j.dib.2023.108968
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
White threads fish Holothuria (Mertensiothuria) leucospi-lota (Brandt, 1835) or locally known as bat puntil is a neritic marine organism, and it is widely distributed in Indo Pacific. They serve many important roles in ecosystem services and were discovered to contain many bioactive compounds that are useful for medicinal value. However, despite its abun-dance in Malaysian seawater, there is still a lack of records on H. leucospilota mitochondrial genome (mitogenome) from Malaysia. The mitogenome of H. leucospilota originating from Sedili Kechil, Kota Tinggi, Johor, Malaysia, is presented here. Whole genome sequencing was successfully sequenced using Illumina NovaSEQ60 0 0 sequencing system and the mitochondrial-derived contigs were assembled using de novo approach. The size of the mitogenome is 15,982 bp which consists of 13 protein-coding genes (PCGs), 21 transfer RNAs, and 2 ribosomal RNAs. The overall composition of nucleotide bases was estimated to be 25.8% for T, 25.9% for C, 31.8% for A and 16.5% for G (with A + T content of 57.6%). Maximum likelihood phylogenetic tree analysis revealed that the mitochondrial Protein-Coding Genes (PCGs) sequence data from our H. leucospilota is closely related to H. leucospilota from accession number MK940237 and H. leucospilota from accession number MN594790, followed by H. leucospilota from accession number MN276190, forming sister group with H. hilla (MN163001), known as Tiger tail sea cucumber. The mitogenome of H. leucospilota will be valuable for genetic research, mitogenome reference and future conservation management of sea cucumber in Malaysia. The mitogenome data of H. leucospilota from Sedili Kechil, Kota Tinggi, Johor, Malaysia is available in the GenBank database repository with accession number ON584426.(c) 2023 The Authors. Published by Elsevier Inc. This is an open access article under the CC BY license ( http://creativecommons.org/licenses/by/4.0/ )
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