Towards a purely physics-based computational binding affinity estimation

被引:1
|
作者
Polasa, Adithya [1 ]
Moradi, Mahmoud [1 ]
机构
[1] Univ Arkansas, Fayetteville, AR 72701 USA
来源
NATURE COMPUTATIONAL SCIENCE | 2023年 / 3卷 / 01期
关键词
FREE-ENERGIES;
D O I
10.1038/s43588-023-00396-4
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
Determining whether a drug candidate has sufficient affinity to its target is a critical part of drug development. A purely physics-based computational method was developed that uses non-equilibrium statistical mechanics approaches alongside molecular dynamics simulations. This technique could enable researchers to accurately estimate the binding affinities of potential drug candidates.
引用
收藏
页码:10 / 10
页数:1
相关论文
共 50 条
  • [1] Towards a purely physics-based computational binding affinity estimation
    Nature Computational Science, 2023, 3 : 10 - 11
  • [2] A purely physics-based computational binding affinity estimation from restrained umbrella sampling simulations
    Polasa, Adithya
    Kumar, Vivek Govind
    Moradi, Mahmoud
    BIOPHYSICAL JOURNAL, 2024, 123 (03) : 471A - 471A
  • [3] Physics-based enzyme design: Predicting binding affinity and catalytic activity
    Sirin, Sarah
    Pearlman, David A.
    Sherman, Woody
    PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2014, 82 (12) : 3397 - 3409
  • [4] Physics-based flow estimation of fluids
    Nakajima, Y
    Inomata, H
    Nogawa, H
    Sato, Y
    Tamura, S
    Okazaki, K
    Torii, S
    PATTERN RECOGNITION, 2003, 36 (05) : 1203 - 1212
  • [5] Physics-Based Computational Protein Design: An Update
    Mignon, David
    Druart, Karen
    Michael, Eleni
    Opuu, Vaitea
    Polydorides, Savvas
    Villa, Francesco
    Gaillard, Thomas
    Panel, Nicolas
    Archontis, Georgios
    Simonson, Thomas
    JOURNAL OF PHYSICAL CHEMISTRY A, 2020, 124 (51): : 10637 - 10648
  • [6] Physics-based reduced order model for computational geomechanics
    Zhao, Hongbo
    Chen, Bingrui
    GEOMECHANICS AND ENGINEERING, 2021, 27 (04) : 411 - 424
  • [7] Physics-based Performance Enhancement in Computational Electromagnetics: A Review
    Baghai-Wadji, Alireza
    2015 IEEE SYMPOSIUM SERIES ON COMPUTATIONAL INTELLIGENCE (IEEE SSCI), 2015, : 1190 - 1197
  • [8] Physics-Based Computational Methods for Aero-Acoustics
    Gabard, G.
    Astley, R. J.
    Gamallo, P.
    Kennedy, G.
    IUTAM SYMPOSIUM ON COMPUTATIONAL AERO-ACOUSTICS FOR AIRCRAFT NOISE PREDICTION, 2010, 6 : 183 - 192
  • [9] Towards physics-based segmentation of photographic color images
    Luo, J
    Gray, RT
    Lee, HC
    INTERNATIONAL CONFERENCE ON IMAGE PROCESSING - PROCEEDINGS, VOL III, 1997, : 58 - 61
  • [10] Nonlinear piezoelectric effects - towards physics-based computational modelling of micro-cracking, fatigue, and switching
    Menzel, A.
    Utzinger, J.
    Arockiarajan, A.
    SMART DEVICES: MODELING OF MATERIAL SYSTEMS, 2008, 1029 : 209 - +