From Microstates to Macrostates in the Conformational Dynamics of GroEL: A Single-Molecule Fo''rster Resonance Energy Transfer Study

被引:3
|
作者
Liebermann, Demian G. [1 ]
Jungwirth, Jakub [1 ]
Riven, Inbal [1 ]
Barak, Yoav [2 ]
Levy, Dorit [1 ]
Horovitz, Amnon [3 ]
Haran, Gilad [1 ]
机构
[1] Weizmann Inst Sci, Dept Chem & Biol Phys, IL-76100 Rehovot, Israel
[2] Weizmann Inst Sci, Chem Res Support, IL-76100 Rehovot, Israel
[3] Weizmann Inst Sci, Chem & Struct Biol, IL-76100 Rehovot, Israel
来源
JOURNAL OF PHYSICAL CHEMISTRY LETTERS | 2023年 / 14卷 / 29期
基金
欧洲研究理事会;
关键词
INDUCED ALLOSTERIC TRANSITIONS; CHAPERONIN GROEL; CRYSTAL-STRUCTURE; KINETIC-ANALYSIS; SUBSTRATE-BINDING; ESCHERICHIA-COLI; RING MUTANT; ATP; POLYPEPTIDE; NUCLEOTIDE;
D O I
10.1021/acs.jpclett.3c01281
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The chaperonin GroELis a multisubunit molecular machinethat assistsin protein folding in the Escherichia coli cytosol. Past studies have shown that GroEL undergoes large allostericconformational changes during its reaction cycle. Here, we reportsingle-molecule Fo''rster resonance energy transfer measurementsthat directly probe the conformational transitions of one subunitwithin GroEL and its single-ring variant under equilibrium conditions.We find that four microstates span the conformational manifold ofthe protein and interconvert on the submillisecond time scale. A uniqueset of relative populations of these microstates, termed a macrostate,is obtained by varying solution conditions, e.g., adding differentnucleotides or the cochaperone GroES. Strikingly, ATP titration studiesdemonstrate that the partition between the apo and ATP-ligated conformationalmacrostates traces a sigmoidal response with a Hill coefficient similarto that obtained in bulk experiments of ATP hydrolysis. These coincidingresults from bulk measurements for an entire ring and single-moleculemeasurements for a single subunit provide new evidence for the concertedallosteric transition of all seven subunits.
引用
收藏
页码:6513 / 6521
页数:9
相关论文
共 50 条
  • [1] Multipair Fo?rster Resonance Energy Transfer via Spectrally Resolved Single-Molecule Detection
    Phelps, Carey
    Huang, Tao
    Wang, Jing
    Nan, Xiaolin
    JOURNAL OF PHYSICAL CHEMISTRY B, 2022, 126 (31): : 5765 - 5771
  • [2] Single-molecule Förster resonance energy transfer studies of RNA structure, dynamics and function
    Helm M.
    Kobitski A.Y.
    Nienhaus G.U.
    Biophysical Reviews, 2009, 1 (4) : 161 - 176
  • [3] Time heterogeneity of the Förster radius from dipole orientational dynamics impacts single-molecule Förster resonance energy transfer experiments
    Frost, David
    Cook, Keisha
    Sanabria, Hugo
    PHYSICAL REVIEW RESEARCH, 2025, 7 (02):
  • [4] Analysis of Enzyme Conformation Dynamics Using Single-Molecule Förster Resonance Energy Transfer (smFRET)
    Huynh, Mai
    Sengupta, Bhaswati
    BIOPHYSICA, 2022, 2 (02): : 123 - 134
  • [5] Catalytic single-molecule Fo?rster resonance energy transfer biosensor for uracil-DNA glycosylase detection and cellular imaging
    Zhang, Qian
    Li, Chen-chen
    Ma, Fei
    Luo, Xiliang
    Zhang, Chun-yang
    BIOSENSORS & BIOELECTRONICS, 2022, 213
  • [6] Fast Conformational Dynamics in GroEL Revealed by Single-molecule FRET
    Liebermann, Demian
    Haran, Gilad
    Horovitz, Amnon
    PROTEIN SCIENCE, 2021, 30 : 74 - 75
  • [7] Studying DNA–protein interactions with single-molecule Förster resonance energy transfer
    Shazia Farooq
    Carel Fijen
    Johannes Hohlbein
    Protoplasma, 2014, 251 : 317 - 332
  • [8] Nanosecond dynamics of single-molecule fluorescence resonance energy transfer
    Ariunbold, GO
    Agarwal, GS
    Wang, Z
    Scully, MO
    Walther, H
    JOURNAL OF PHYSICAL CHEMISTRY A, 2004, 108 (13): : 2402 - 2404
  • [9] Protein structure and dynamics from single-molecule fluorescence resonance energy transfer
    Wang, D
    Geva, E
    JOURNAL OF PHYSICAL CHEMISTRY B, 2005, 109 (04): : 1626 - 1634
  • [10] RNA folding dynamics by single-molecule fluorescence resonance energy transfer
    Zhao, Rui
    Rueda, David
    METHODS, 2009, 49 (02) : 112 - 117