Genomic attributes and characterization of novel exopolysaccharide-producing bacterium Halomonas piscis sp. nov. isolated from jeotgal

被引:1
|
作者
Kim, Bora [1 ]
Yang, Ah-In [1 ,2 ]
Joe, Hae-In [2 ]
Kim, Ki Hyun [1 ]
Choe, Hanna [1 ]
Joe, Sung-Hong [1 ,3 ]
Jun, Min Ok [1 ]
Shin, Na-Ri [1 ]
机构
[1] Korea Res Inst Biosci & Biotechnol, Biol Resource Ctr, Jeongeup Si, Jeollabuk Do, South Korea
[2] Kyung Hee Univ, Dept Biol, Seoul, South Korea
[3] Chonnam Natl Univ, Dept Microbiol, Med Sch, Hwasun, South Korea
关键词
Halomonas; halophilic bacteria; jeotgal; exopolysaccharide; exopolysaccharide-producing bacteria; SPECIES DELINEATION; IDENTIFICATION; FUNCTIONALITY; VENTOSAE;
D O I
10.3389/fmicb.2023.1303039
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Halophilic bacterial strains, designated SG2L-4 T , SB1M4, and SB2L-5, were isolated from jeotgal, a traditional Korean fermented food. Cells are Gram-stain-negative, aerobic, non-motile, rod-shaped, catalase-positive, and oxidase-negative. Phylogenetic analysis based on the 16S rRNA gene sequence revealed that strain SG2L-4 T is closely related to Halomonas garicola KACC 18117 T with a similarity of 96.2%. The complete genome sequence of strain SG2L-4 T was 3,227,066 bp in size, with a genomic G + C content of 63.3 mol%. The average nucleotide identity and digital DNA-DNA hybridization values between strain SG2L-4 T and H. garicola KACC 18117 T were 90.5 and 40.7%, respectively. The optimal growth conditions for strain SG2L-4 T were temperatures between 30 and 37 degrees C, a pH value of 7, and the presence of 10% (w/v) NaCl. The polar lipids identified included diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, an unknown phospholipid, an unknown glycolipid, and an unknown polar lipid. The major cellular fatty acids were C 16:0 , summed features 8 (C 18:1 omega 6 c and/or C 18:1 omega 7 c ), C 19:0 cyclo omega 8 c , and summed features 3 (C 16:1 omega 6 c and/or C 16:1 omega 7 c ). The predominant respiratory quinone was ubiquinone with nine isoprene units (Q-9). Based on the phenotypic, genotypic, and chemotaxonomic results, strain SG2L-4 T represents a novel species within the genus Halomonas , for which the name Halomonas piscis sp. nov. is proposed. The type strain is SG2L-4 T (=KCTC 92842 T = JCM 35929 T ). Functional annotation of the genome of strain SG2L-4 T confirmed the presence of exopolysaccharide synthesis protein (ExoD) and capsular polysaccharide-related genes. Strain SG2L-4 T also exhibited positive results in Molisch's test, indicating the presence of extracellular carbohydrates and exopolysaccharides (EPS) production. These findings provide valuable insights into the EPS-producing capabilities of H. piscis sp. nov. isolated from jeotgal, contributing to understanding its potential roles in food and biotechnological applications.
引用
收藏
页数:11
相关论文
共 50 条
  • [21] Bacillus piscis sp. nov., a novel bacterium isolated from the muscle of the antarctic fish Dissostichus mawsoni
    Jae-Bong Lee
    Seon Hwa Jeon
    Seok-Gwan Choi
    Hee-Young Jung
    Myung Kyum Kim
    Sathiyaraj Srinivasan
    Journal of Microbiology, 2016, 54 : 809 - 813
  • [22] Palleronia marisminoris gen. nov., sp nov., a moderately halophilic, exopolysaccharide-producing bacterium belonging to the 'Alphaproteobacteria', isolated from a saline soil
    Martínez-Checa, F
    Quesada, E
    Martínez-Cánovas, MJ
    Llamas, I
    Béjar, V
    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2005, 55 : 2525 - 2530
  • [23] Halomonas faecis sp. nov., a halophilic bacterium isolated from human faeces
    Liu, Zhu-Xiang
    Chen, Jin-Hua
    Yang, Ling-Ling
    Feng, Yu-Zhou
    Deng, Li-Ying
    He, Jian-Wu
    Tang, Shu-Kun
    Chen, Yi-Guang
    EXTREMOPHILES, 2022, 26 (02)
  • [24] Halomonas faecis sp. nov., a halophilic bacterium isolated from human faeces
    Zhu-Xiang Liu
    Jin-Hua Chen
    Ling-Ling Yang
    Yu-Zhou Feng
    Li-Ying Deng
    Jian-Wu He
    Shu-Kun Tang
    Yi-Guang Chen
    Extremophiles, 2022, 26
  • [25] Sphingomonas pituitosa sp nov., an exopolysaccharide-producing bacterium that secretes an unusual type of sphingan
    Denner, EBM
    Paukner, S
    Kämpfer, P
    Moore, ERB
    Abraham, WR
    Busse, HJ
    Wanner, G
    Lubitz, W
    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2001, 51 : 827 - 841
  • [26] Halomonas almeriensis sp nov., a moderately halophilic, exopolysaccharide-producing bacterium from Cabo de Gata, Almeria, south-east Spain
    Martínez-Checa, F
    Béjar, V
    Martínez-Cánovas, MJ
    Llamas, I
    Quesada, E
    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2005, 55 : 2007 - 2011
  • [27] Halomonas borealis sp. nov. and Halomonas niordiana sp. nov., two new species isolated from seawater
    Dieguez, Ana L.
    Balboa, Sabela
    Romalde, Jesus L.
    SYSTEMATIC AND APPLIED MICROBIOLOGY, 2020, 43 (01)
  • [28] Erratum to: Bacillus piscis sp. nov., a novel bacterium isolated from the muscle of the antarctic fish Dissostichus mawsoni
    Jae-Bong Lee
    Seon Hwa Jeon
    Seok-Gwan Choi
    Hee-Young Jung
    Myung Kyum Kim
    Sathiyaraj Srinivasan
    Journal of Microbiology, 2019, 57 : 539 - 539
  • [29] Halomonas tabrizica sp. nov., a novel moderately halophilic bacterium isolated from Urmia Lake in Iran
    Sepideh Zununi Vahed
    Haleh Forouhandeh
    Vahideh Tarhriz
    Nader Chaparzadeh
    Mohammad Amin Hejazi
    Che Ok Jeon
    Mohammad Saeid Hejazi
    Yunho Lee
    Antonie van Leeuwenhoek, 2018, 111 : 1139 - 1148
  • [30] Halomonas heilongjiangensis sp. nov., a novel moderately halophilic bacterium isolated from saline and alkaline soil
    Guiming Dou
    Wei He
    Hongcan Liu
    Yuchao Ma
    Antonie van Leeuwenhoek, 2015, 108 : 403 - 413