Prognostic markers of ferroptosis-related long non-coding RNA in lung adenocarcinomas

被引:3
|
作者
Mao, Kaimin [1 ]
Tang, Ri [1 ]
Wu, Yali [2 ]
Zhang, Zhiyun [1 ]
Gao, Yuan [1 ]
Huang, Huijing [3 ]
机构
[1] Shanghai Jiao Tong Univ, Renji Hosp, Sch Med, Dept Crit Care Med, Shanghai, Peoples R China
[2] Huazhong Univ Sci & Technol, Union Hosp, Tongji Med Coll, Dept Resp & Crit Care Med,NHC Key Lab Pulm Dis, Wuhan, Peoples R China
[3] Fudan Univ, Zhongshan Hosp, Dept Rheumatol, Shanghai, Peoples R China
关键词
ferroptosis; lncRNA; lung adenocarcinoma; risk scores model; immunotherapy; CANCER; LNCRNA; PROMOTES; IDENTIFICATION;
D O I
10.3389/fgene.2023.1118273
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Ferroptosis is a recently established type of iron-dependent programmed cell death. Growing studies have focused on the function of ferroptosis in cancers, including lung adenocarcinoma (LUAD). However, the factors involved in the regulation of ferroptosis-related genes are not fully understood. In this study, we collected data from lung adenocarcinoma datasets of the Cancer Genome Atlas (TCGA-LUAD). The expression profiles of 60 ferroptosis-related genes were screened, and two differentially expressed ferroptosis subtypes were identified. We found the two ferroptosis subtypes can predict clinical outcomes and therapeutic responses in LUAD patients. Furthermore, key long non-coding RNAs (lncRNAs) were screened by single factor Cox and least absolute shrinkage and selection operator (LASSO) based on which co-expressed with the 60 ferroptosis-related genes. We then established a risk score model which included 13 LUAD ferroptosis-related lncRNAs with a multi-factor Cox regression. The risk score model showed a good performance in evaluating the outcome of LUAD. What's more, we divided TCGA-LUAD tumor samples into two groups with high- and low-risk scores and further explored the differences in clinical characteristics, tumor mutation burden, and tumor immune cell infiltration among different LUAD tumor risk score groups and evaluate the predictive ability of risk score for immunotherapy benefit. Our findings provide good support for immunotherapy in LUAD in the future.
引用
收藏
页数:18
相关论文
共 50 条
  • [21] Accurate prognostic prediction for patients with clear cell renal cell carcinoma using a ferroptosis-related long non-coding RNA risk model
    Xiang, Xuebao
    Guo, Yi
    Chen, Zhongyuan
    Zhang, Fangxin
    Qin, Yan
    CANCER BIOMARKERS, 2023, 37 (02) : 95 - 107
  • [22] Constructing a Ferroptosis-related Long Non-coding RNA Signature to Predict the Prognostic of Head and Neck Squamous Cell Carcinoma Patients by Bioinformatic Analysis
    Lu, Rui
    Li, Zhiyong
    Yin, Shucheng
    BIOCHEMICAL GENETICS, 2022, 60 (05) : 1825 - 1844
  • [23] Constructing a Ferroptosis-related Long Non-coding RNA Signature to Predict the Prognostic of Head and Neck Squamous Cell Carcinoma Patients by Bioinformatic Analysis
    Rui Lu
    Zhiyong Li
    Shucheng Yin
    Biochemical Genetics, 2022, 60 : 1825 - 1844
  • [24] A Novel Ferroptosis-Related Long Non-Coding RNA Prognostic Signature Correlates With Genomic Heterogeneity, Immunosuppressive Phenotype, and Drug Sensitivity in Hepatocellular Carcinoma
    Li, Guanghao
    Liu, Yongheng
    Zhang, Yanting
    Xu, Yao
    Zhang, Jin
    Wei, Xianfu
    Zhang, Zhongmin
    Zhang, Chao
    Feng, Jinyan
    Li, Qiang
    Wang, Guowen
    FRONTIERS IN IMMUNOLOGY, 2022, 13
  • [25] Novel signature of ferroptosis-related long non-coding RNA to predict lower-grade glioma overall survival
    Wu, Shiji
    Wu, Wenxi
    Zhong, Yaqi
    Chen, Xingte
    Wu, Junxin
    DISCOVER ONCOLOGY, 2024, 15 (01)
  • [26] Identification of seven novel ferroptosis-related long non-coding RNA signatures as a diagnostic biomarker for acute myeloid leukemia
    Zheng, Zhiyuan
    Wu, Wei
    Lin, Zehang
    Liu, Shuhan
    Chen, Qiaoqian
    Jiang, Xiandong
    Xue, Yan
    Lin, Donghong
    BMC MEDICAL GENOMICS, 2021, 14 (01)
  • [27] Identification of seven novel ferroptosis-related long non-coding RNA signatures as a diagnostic biomarker for acute myeloid leukemia
    Zhiyuan Zheng
    Wei Wu
    Zehang Lin
    Shuhan Liu
    Qiaoqian Chen
    Xiandong Jiang
    Yan Xue
    Donghong Lin
    BMC Medical Genomics, 14
  • [28] A New Ferroptosis-Related Long Non-Coding RNA Risk Model Predicts the Prognosis of Patients With Papillary Thyroid Cancer
    Zhao, Jun Yu
    Yao, Jin Ming
    Zhang, Xin Zhong
    Li Wang, Kai
    Jiang, Shan
    Guo, Si Yi
    Sheng, Qi Qi
    Liao, Lin
    Dong, Jian Jun
    WORLD JOURNAL OF ONCOLOGY, 2024, 15 (04) : 648 - 661
  • [29] Role of ferroptosis and ferroptosis-related non-coding RNAs in the occurrence and development of gastric cancer
    Lu, Ling
    Chen, Bei
    Xu, Yumeng
    Zhang, Xinyi
    Jin, Longtao
    Qian, Hui
    Wang, Yi
    Liang, Zhao Feng
    FRONTIERS IN PHARMACOLOGY, 2022, 13
  • [30] Ferroptosis-Related Long Non-Coding RNA Signature Contributes to the Prediction of Prognosis Outcomes in Head and Neck Squamous Cell Carcinomas
    Jiang, Wenru
    Song, Yingtao
    Zhong, Zhaowei
    Gao, Jili
    Meng, Xiaofei
    FRONTIERS IN GENETICS, 2021, 12