Self-supervised tumor segmentation and prognosis prediction in osteosarcoma using multiparametric MRI and clinical characteristics

被引:10
|
作者
Zhou, Zhixun [1 ]
Xie, Peng [2 ]
Dai, Zhehao [2 ]
Wu, Jia [1 ,3 ]
机构
[1] Cent South Univ, Sch Comp Sci & Engn, Changsha 410083, Peoples R China
[2] Cent South Univ, Xiangya Hosp 2, Dept Spine Surg, Changsha 410011, Peoples R China
[3] Monash Univ, Res Ctr Artificial Intelligence, Clayton, Vic 3800, Australia
关键词
Osteosarcoma auxiliary diagnosis; Segmentation; Prognosis prediction; Multiparametric MRI; Self-supervised learning; CT;
D O I
10.1016/j.cmpb.2023.107974
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
Background and objective: Osteosarcoma has a high mortality among malignant bone tumors. MRI-based tumor segmentation and prognosis prediction are helpful to assist doctors in detecting osteosarcoma, evaluating the patient's status, and improving patient survival. Current intelligent diagnostic approaches focus on segmentation with single-parameter MRI, which ignores the nature of MRI resulting in poor performance, and lacks the connection with prognosis prediction. Besides, osteosarcoma is a rare disease, and their few labeled data may lead to model overfitting. Methods: We propose a three-stage pipeline for segmentation and prognosis prediction of osteosarcoma to assist doctors in diagnosis. First, we propose the Multiparameter Fusion Contrast Learning (MPFCLR) algorithm to share pre-training weights for the segmentation model using unlabeled data. Then, we construct a multi parametric fusion network (MPFNet), which fuses the complementary features from multiparametric MRI (CET1WI, T2WI). It can automatically segment tumor and necrotic regions. Finally, a fusion nomogram is constructed by segmentation masks and clinical characteristics (volume, tumor spread) to predict the patient's prognostic status. Results: Our experiments used data from 136 patients at the Second Xiangya Hospital in China. According to experiments, the MPFNet achieves 84.19 % mean DSC and 84.56 % mean F1-score in segmenting tumor and necrotic regions, surpassing existing models and single-parameter MRI input for osteosarcoma segmentation. Besides, MPFCLR improves the segmentation performance and convergence speed. In prognosis prediction, our fusion nomogram (C-index: 0.806, 95 %CI: 0.758-0.854) is better than radiomics (C-index: 0.753, 95 %CI: 0.6850.841) and clinical (C-index: 0.794, 95 %CI: 0.735-0.854) nomograms in predictive performance. Compared to the comparison models, our model is closest to the prediction model based on physician annotations. Moreover, it can accurately distinguish the patients' prognostic status with good or poor. Conclusion: Our proposed solution can provide references for clinicians to detect osteosarcoma, evaluate patient status, and make personalized decisions. It can reduce delayed treatment or overtreatment and improve patient survival.
引用
收藏
页数:13
相关论文
共 50 条
  • [41] Fully automated segmentation of brain tumor from multiparametric MRI using 3D context deep supervised U-Net
    Lin, Mingquan
    Momin, Shadab
    Lei, Yang
    Wang, Hesheng
    Curran, Walter J.
    Liu, Tian
    Yang, Xiaofeng
    MEDICAL PHYSICS, 2021, 48 (08) : 4365 - 4374
  • [42] STRESS: Super-Resolution for Dynamic Fetal MRI Using Self-supervised Learning
    Xu, Junshen
    Turk, Esra Abaci
    Grant, P. Ellen
    Golland, Polina
    Adalsteinsson, Elfar
    MEDICAL IMAGE COMPUTING AND COMPUTER ASSISTED INTERVENTION - MICCAI 2021, PT VII, 2021, 12907 : 197 - 206
  • [43] Qutrit-Inspired Fully Self-Supervised Shallow Quantum Learning Network for Brain Tumor Segmentation
    Konar, Debanjan
    Bhattacharyya, Siddhartha
    Panigrahi, Bijaya K.
    Behrman, Elizabeth C.
    IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS, 2022, 33 (11) : 6331 - 6345
  • [44] Improving Tumor-Infiltrating Lymphocytes Score Prediction in Breast Cancer with Self-Supervised Learning
    Kim, Sijin
    Hasan, Kazi Rakib
    Ando, Yu
    Ko, Seokhwan
    Lee, Donghyeon
    Park, Nora Jee-Young
    Cho, Junghwan
    LIFE-BASEL, 2024, 14 (01):
  • [45] Prediction of Clinically Significant Prostate Cancer Using Multiparametric MRI, Biparametric MRI, and Clinical Parameters
    Oberneder, Maximilian
    Henzler, Thomas
    Kriegmair, Martin
    Vag, Tibor
    Roethke, Matthias
    Siegert, Sabine
    Lang, Roland
    Lenk, Julia
    Gawlitza, Joshua
    UROLOGIA INTERNATIONALIS, 2024,
  • [46] Self-Supervised Drivable Area Segmentation Using LiDAR's Depth Information for Autonomous Driving
    Ma, Fulong
    Liu, Yang
    Wang, Sheng
    Wu, Jin
    Qi, Weiqing
    Liu, Ming
    2023 IEEE/RSJ INTERNATIONAL CONFERENCE ON INTELLIGENT ROBOTS AND SYSTEMS, IROS, 2023, : 41 - 48
  • [47] COVID-19 Infection Segmentation and Severity Assessment Using a Self-Supervised Learning Approach
    Song, Yao
    Liu, Jun
    Liu, Xinghua
    Tang, Jinshan
    DIAGNOSTICS, 2022, 12 (08)
  • [48] Synthetic MRI-Assisted and Self-Supervised Adaptive Segmentation of Organs-at -Risk (OARs) in MRI-Based Radiation Therapy
    Kalantar, R.
    Ingle, M.
    Winfield, J. M.
    Messiou, C.
    Lalondrelle, S.
    Koh, D. M.
    Blackledge, M.
    INTERNATIONAL JOURNAL OF RADIATION ONCOLOGY BIOLOGY PHYSICS, 2023, 117 (02): : S116 - S116
  • [49] Self-supervised machine learning using adult inpatient data produces effective models for pediatric clinical prediction tasks
    Lemmon, Joshua
    Guo, Lin Lawrence
    Steinberg, Ethan
    Morse, Keith E.
    Fleming, Scott Lanyon
    Aftandilian, Catherine
    Pfohl, Stephen R.
    Posada, Jose D.
    Shah, Nigam
    Fries, Jason
    Sung, Lillian
    JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION, 2023, 30 (12) : 2004 - 2011
  • [50] Self-supervised Body Image Acquisition Using a Deep Neural Network for Sensorimotor Prediction
    Laflaquiere, Alban
    Hafner, Verena V.
    2019 JOINT IEEE 9TH INTERNATIONAL CONFERENCE ON DEVELOPMENT AND LEARNING AND EPIGENETIC ROBOTICS (ICDL-EPIROB), 2019, : 117 - 122