The status of digital pathology and associated infrastructure within Alzheimer's Disease Centers

被引:7
|
作者
Scalco, Rebeca [1 ]
Hamsafar, Yamah [1 ]
White III, Charles L. [2 ]
Schneider, Julie A. [3 ]
Reichard, Robert Ross [4 ]
Prokop, Stefan [5 ]
Perrin, Richard J. [6 ,7 ,8 ]
Nelson, Peter T. [9 ]
Mooney, Sean [10 ,11 ]
Lieberman, Andrew P. [12 ]
Kukull, Walter A. [10 ,11 ]
Kofler, Julia [13 ]
Keene, Christopher Dirk [14 ]
Kapasi, Alifiya [3 ]
Irwin, David J. [15 ]
Gutman, David A. [16 ,17 ,18 ]
Flanagan, Margaret E. [19 ,20 ]
Crary, John F. [21 ,22 ,23 ]
Chan, Kwun C. [10 ,11 ]
Murray, Melissa E. [24 ]
Dugger, Brittany N. [1 ,25 ]
机构
[1] Univ Calif Davis, Dept Pathol & Lab Med, Sacramento, CA USA
[2] Univ Texas Southwestern Med Ctr, Dept Pathol, Dallas, TX USA
[3] Rush Alzheimers Dis Ctr, Chicago, IL USA
[4] Mayo Clin, Rochester, MN USA
[5] Univ Florida, Coll Med, Dept Pathol, Gainesville, FL USA
[6] Washington Univ, Sch Med, Dept Pathol & Immunol, St Louis, MO USA
[7] Washington Univ, Sch Med, Dept Neurol, St Louis, MO USA
[8] Washington Univ, Sch Med, Knight Alzheimers Dis Res Ctr, St Louis, MO USA
[9] Univ Kentucky, Lexington, KY USA
[10] Univ Washington, Inst Med Data Sci, Seattle, WA USA
[11] Univ Washington, Dept Biomed Informat & Med Educ, Seattle, WA USA
[12] Univ Michigan, Med Sch, Dept Pathol, Ann Arbor, MI USA
[13] Univ Pittsburgh, Dept Pathol, Pittsburgh, PA USA
[14] Univ Washington, Dept Lab Med & Pathol, Seattle, WA USA
[15] Univ Penn, Perelman Sch Med, Dept Neurol, Philadelphia, PA USA
[16] Emory Univ, Sch Med, Dept Neurol, Atlanta, GA USA
[17] Emory Univ, Sch Med, Dept Psychiat, Atlanta, GA USA
[18] Emory Univ, Sch Med, Dept Biomed Informat, Atlanta, GA USA
[19] Northwestern Univ, Feinberg Sch Med, Dept Pathol, Chicago, IL USA
[20] Northwestern Univ, Feinberg Sch Med, Mesulam Ctr Cognit Neurol & Alzheimers Dis, Chicago, IL USA
[21] Icahn Sch Med Mt Sinai, Neuropathol Brain Bank & Res CoRE, Friedman Brain Inst, Dept Pathol,Ronald M Loeb Ctr Alzheimers Dis, New York, NY USA
[22] Icahn Sch Med Mt Sinai, Neuropathol Brain Bank & Res CoRE, Friedman Brain Inst, Dept Neurosci,Ronald M Loeb Ctr Alzheimers Dis, New York, NY USA
[23] Icahn Sch Med Mt Sinai, Neuropathol Brain Bank & Res CoRE, Friedman Brain Inst, Dept Artificial Intelligence & Human Hlth,Ronald M, New York, NY USA
[24] Mayo Clin, Dept Neurosci, Jacksonville, FL USA
[25] Univ Calif Davis, Sch Med, Dept Pathol & Lab Med, 4645 2nd Ave,3400A Res Bldg 3, Sacramento, CA 95817 USA
基金
美国国家卫生研究院;
关键词
Alzheimer disease; Computational pathology; Deep Learning; Digital pathology; Machine Learning; Quantitative pathology; Slide scanner; IMAGE-ANALYSIS; NEUROPATHOLOGIC ASSESSMENT; CLASSIFICATION; CONCORDANCE; BRAIN; BETA;
D O I
10.1093/jnen/nlac127
中图分类号
R74 [神经病学与精神病学];
学科分类号
摘要
Digital pathology (DP) has transformative potential, especially for Alzheimer disease and related disorders. However, infrastructure barriers may limit adoption. To provide benchmarks and insights into implementation barriers, a survey was conducted in 2019 within National Institutes of Health's Alzheimer's Disease Centers (ADCs). Questions covered infrastructure, funding sources, and data management related to digital pathology. Of the 35 ADCs to which the survey was sent, 33 responded. Most respondents (81%) stated that their ADC had digital slide scanner access, with the most frequent brand being Aperio/Leica (62.9%). Approximately a third of respondents stated there were fees to utilize the scanner. For DP and machine learning (ML) resources, 41% of respondents stated none was supported by their ADC. For scanner purchasing and operations, 50% of respondents stated they received institutional support. Some were unsure of the file size of scanned digital images (37%) and total amount of storage space files occupied (50%). Most (76%) were aware of other departments at their institution working with ML; a similar (76%) percentage were unaware of multiuniversity or industry partnerships. These results demonstrate many ADCs have access to a digital slide scanner; additional investigations are needed to further understand hurdles to implement DP and ML workflows.
引用
收藏
页码:202 / 211
页数:10
相关论文
共 50 条
  • [21] Vascular pathology in Alzheimer's disease
    Miyakawa, T
    ALZHEIMER'S DISEASE: VASCULAR ETIOLOGY AND PATHOLOGY, 2002, 977 : 303 - 305
  • [22] Alzheimer's disease pathology in synucleinopathies
    Attems, Johannes
    LANCET NEUROLOGY, 2017, 16 (01): : 22 - 23
  • [23] Synaptic pathology in Alzheimer's disease
    Davisson, P
    Blennow, K
    NEUROCHEMISTRY: CELLULAR, MOLECULAR, AND CLINICAL ASPECTS, 1997, : 39 - 46
  • [24] Vascular pathology in Alzheimer's disease
    Miyakawa, Taihei
    PSYCHOGERIATRICS, 2010, 10 (01) : 39 - 44
  • [25] Synapse pathology in Alzheimer?s disease
    Griffiths, Jessica
    Grant, Seth G. N.
    SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY, 2023, 139 : 13 - 23
  • [26] Vascular pathology in Alzheimer's Disease
    Hulette, CM
    Ervin, JF
    Pannell, C
    Schmechel, DE
    Strittmatter, WJ
    Saunders, AM
    NEUROLOGY, 2001, 56 (08) : A182 - A182
  • [27] Dendritic Pathology in Alzheimer's Disease
    Baloyannis, S. J.
    PROCEEDINGS OF THE 6TH INTERNATIONAL CONGRESS ON THE IMPROVEMENT OF THE QUALITY OF LIFE ON DEMENTIA, PARKINSON'S DISEASE, EPILEPSY, MS AND MUSCOLAR DISORDERS, 2008, : 1 - 10
  • [28] The Molecular Pathology of Alzheimer's Disease
    Harrington, Charles R.
    NEUROIMAGING CLINICS OF NORTH AMERICA, 2012, 22 (01) : 11 - +
  • [29] Synaptic pathology in Alzheimer's disease
    Davidsson, P
    Blennow, K
    JOURNAL OF NEUROCHEMISTRY, 1996, 66 : S3 - S3
  • [30] The neurofibrillary pathology of Alzheimer's disease
    Goedert, M
    NEUROSCIENTIST, 1997, 3 (02): : 131 - 141