The status of digital pathology and associated infrastructure within Alzheimer's Disease Centers

被引:7
|
作者
Scalco, Rebeca [1 ]
Hamsafar, Yamah [1 ]
White III, Charles L. [2 ]
Schneider, Julie A. [3 ]
Reichard, Robert Ross [4 ]
Prokop, Stefan [5 ]
Perrin, Richard J. [6 ,7 ,8 ]
Nelson, Peter T. [9 ]
Mooney, Sean [10 ,11 ]
Lieberman, Andrew P. [12 ]
Kukull, Walter A. [10 ,11 ]
Kofler, Julia [13 ]
Keene, Christopher Dirk [14 ]
Kapasi, Alifiya [3 ]
Irwin, David J. [15 ]
Gutman, David A. [16 ,17 ,18 ]
Flanagan, Margaret E. [19 ,20 ]
Crary, John F. [21 ,22 ,23 ]
Chan, Kwun C. [10 ,11 ]
Murray, Melissa E. [24 ]
Dugger, Brittany N. [1 ,25 ]
机构
[1] Univ Calif Davis, Dept Pathol & Lab Med, Sacramento, CA USA
[2] Univ Texas Southwestern Med Ctr, Dept Pathol, Dallas, TX USA
[3] Rush Alzheimers Dis Ctr, Chicago, IL USA
[4] Mayo Clin, Rochester, MN USA
[5] Univ Florida, Coll Med, Dept Pathol, Gainesville, FL USA
[6] Washington Univ, Sch Med, Dept Pathol & Immunol, St Louis, MO USA
[7] Washington Univ, Sch Med, Dept Neurol, St Louis, MO USA
[8] Washington Univ, Sch Med, Knight Alzheimers Dis Res Ctr, St Louis, MO USA
[9] Univ Kentucky, Lexington, KY USA
[10] Univ Washington, Inst Med Data Sci, Seattle, WA USA
[11] Univ Washington, Dept Biomed Informat & Med Educ, Seattle, WA USA
[12] Univ Michigan, Med Sch, Dept Pathol, Ann Arbor, MI USA
[13] Univ Pittsburgh, Dept Pathol, Pittsburgh, PA USA
[14] Univ Washington, Dept Lab Med & Pathol, Seattle, WA USA
[15] Univ Penn, Perelman Sch Med, Dept Neurol, Philadelphia, PA USA
[16] Emory Univ, Sch Med, Dept Neurol, Atlanta, GA USA
[17] Emory Univ, Sch Med, Dept Psychiat, Atlanta, GA USA
[18] Emory Univ, Sch Med, Dept Biomed Informat, Atlanta, GA USA
[19] Northwestern Univ, Feinberg Sch Med, Dept Pathol, Chicago, IL USA
[20] Northwestern Univ, Feinberg Sch Med, Mesulam Ctr Cognit Neurol & Alzheimers Dis, Chicago, IL USA
[21] Icahn Sch Med Mt Sinai, Neuropathol Brain Bank & Res CoRE, Friedman Brain Inst, Dept Pathol,Ronald M Loeb Ctr Alzheimers Dis, New York, NY USA
[22] Icahn Sch Med Mt Sinai, Neuropathol Brain Bank & Res CoRE, Friedman Brain Inst, Dept Neurosci,Ronald M Loeb Ctr Alzheimers Dis, New York, NY USA
[23] Icahn Sch Med Mt Sinai, Neuropathol Brain Bank & Res CoRE, Friedman Brain Inst, Dept Artificial Intelligence & Human Hlth,Ronald M, New York, NY USA
[24] Mayo Clin, Dept Neurosci, Jacksonville, FL USA
[25] Univ Calif Davis, Sch Med, Dept Pathol & Lab Med, 4645 2nd Ave,3400A Res Bldg 3, Sacramento, CA 95817 USA
基金
美国国家卫生研究院;
关键词
Alzheimer disease; Computational pathology; Deep Learning; Digital pathology; Machine Learning; Quantitative pathology; Slide scanner; IMAGE-ANALYSIS; NEUROPATHOLOGIC ASSESSMENT; CLASSIFICATION; CONCORDANCE; BRAIN; BETA;
D O I
10.1093/jnen/nlac127
中图分类号
R74 [神经病学与精神病学];
学科分类号
摘要
Digital pathology (DP) has transformative potential, especially for Alzheimer disease and related disorders. However, infrastructure barriers may limit adoption. To provide benchmarks and insights into implementation barriers, a survey was conducted in 2019 within National Institutes of Health's Alzheimer's Disease Centers (ADCs). Questions covered infrastructure, funding sources, and data management related to digital pathology. Of the 35 ADCs to which the survey was sent, 33 responded. Most respondents (81%) stated that their ADC had digital slide scanner access, with the most frequent brand being Aperio/Leica (62.9%). Approximately a third of respondents stated there were fees to utilize the scanner. For DP and machine learning (ML) resources, 41% of respondents stated none was supported by their ADC. For scanner purchasing and operations, 50% of respondents stated they received institutional support. Some were unsure of the file size of scanned digital images (37%) and total amount of storage space files occupied (50%). Most (76%) were aware of other departments at their institution working with ML; a similar (76%) percentage were unaware of multiuniversity or industry partnerships. These results demonstrate many ADCs have access to a digital slide scanner; additional investigations are needed to further understand hurdles to implement DP and ML workflows.
引用
收藏
页码:202 / 211
页数:10
相关论文
共 50 条
  • [1] Digital Pathology and Machine Learning Status within Alzheimer's Disease Centers
    Dugger, Brittany
    White, Charles, III
    Stahly, Brian
    Schneider, Julie
    Robichaud, Eliza-Beth
    Reichard, R. Ross
    Prokop, Stefan
    Perrin, Richard
    Nelson, Peter
    Lieberman, Andrew
    Kukull, Walter
    Kofler, Julia
    Keene, C. Dirk
    Kapasi, Alifiya
    Irwin, David
    Flanagan, Margaret
    Crary, John
    Chan, Kwun Chuen Gary
    Murray, Melissa
    JOURNAL OF NEUROPATHOLOGY AND EXPERIMENTAL NEUROLOGY, 2020, 79 (06): : 694 - 694
  • [2] High-throughput digital quantification of Alzheimer disease pathology and associated infrastructure in large autopsy studies
    Kapasi, Alifiya
    Poirier, Jennifer
    Hedayat, Ahmad
    Scherlek, Ashley
    Mondal, Srabani
    Wu, Tiffany
    Gibbons, John
    Barnes, Lisa L.
    Bennett, David A.
    Leurgans, Sue E.
    Schneider, Julie A.
    JOURNAL OF NEUROPATHOLOGY AND EXPERIMENTAL NEUROLOGY, 2023, : 976 - 986
  • [3] CSF metabolites associated with biomarkers of Alzheimer's disease pathology
    Dong, Ruocheng
    Lu, Qiongshi
    Kang, Hyunseung
    Suridjan, Ivonne
    Kollmorgen, Gwendlyn
    Wild, Norbert
    Deming, Yuetiva
    Van Hulle, Carol A.
    Anderson, Rozalyn M.
    Zetterberg, Henrik
    Blennow, Kaj
    Carlsson, Cynthia M.
    Asthana, Sanjay
    Johnson, Sterling C.
    Engelman, Corinne D.
    FRONTIERS IN AGING NEUROSCIENCE, 2023, 15
  • [4] Cerebrovascular Senescence Is Associated With Tau Pathology in Alzheimer's Disease
    Bryant, Annie G.
    Hu, Miwei
    Carlyle, Becky C.
    Arnold, Steven E.
    Frosch, Matthew P.
    Das, Sudeshna
    Hyman, Bradley T.
    Bennett, Rachel E.
    FRONTIERS IN NEUROLOGY, 2020, 11
  • [5] Pathology of Alzheimer's disease
    Gentleman, SM
    MOVEMENT DISORDERS, 2002, 17 (06) : 1406 - 1406
  • [6] Microglia changes associated to Alzheimer's disease pathology in aged chimpanzees
    Edler, Melissa K.
    Sherwood, Chet C.
    Meindl, Richard S.
    Munger, Emily L.
    Hopkins, William D.
    Ely, John J.
    Erwin, Joseph M.
    Perl, Daniel P.
    Mufson, Elliott J.
    Hof, Patrick R.
    Raghanti, Mary Ann
    JOURNAL OF COMPARATIVE NEUROLOGY, 2018, 526 (18) : 2921 - 2936
  • [7] Oxidative stress-associated cerebrovascular pathology in Alzheimer's disease
    Sompol, Pradoldej
    Kraner, Susan
    Arthiushin, Irina
    Tangpong, Jitbanjong
    Norris, Christopher
    Nelson, Peter
    FREE RADICAL BIOLOGY AND MEDICINE, 2022, 192
  • [8] Rod microglia is associated to tau pathology in the Alzheimer's disease hippocampus
    Fernandez-Valenzuela, J. J.
    Sanchez-Varo, R.
    Lopez-Oliva, E.
    Trujillo-Estrada, L.
    Mejias-Ortega, M.
    Sanchez-Mejias, E.
    Romero-Molina, C.
    Vizuete, M.
    Vitorica, J.
    Gutierrez, A.
    GLIA, 2023, 71 : E971 - E971
  • [9] Markers of neuroinflammation associated with Alzheimer′s disease pathology in older adults
    Popp, Julius
    Oikonomidi, Aikaterini
    Tautvydaite, Domile
    Dayon, Loic
    Bacher, Michael
    Migliavacca, Eugenia
    Henry, Hugues
    Kirkland, Richard
    Severin, India
    Wojcik, Jerome
    Bowman, Gene L.
    BRAIN BEHAVIOR AND IMMUNITY, 2017, 62 : 203 - 211
  • [10] Steroids and Alzheimer's Disease: Changes Associated with Pathology and Therapeutic Potential
    Akwa, Yvette
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2020, 21 (13) : 1 - 29