BioXTAS RAW 2: new developments for a free open-source program for small-angle scattering data reduction and analysis

被引:19
|
作者
Hopkins, Jesse B. [1 ]
机构
[1] Illinois Inst Technol, Dept Phys, Biophys Collaborat Access Team BioCAT, Chicago, IL 60616 USA
基金
美国国家卫生研究院;
关键词
small-angle scattering; data analysis; biological macromolecules; BioXTAS RAW 2; computer programs; INTRINSICALLY DISORDERED PROTEINS; BIOLOGICAL MACROMOLECULES; MOLECULAR-MASS; SAXS; RESOLUTION; COMPLEXES; SOFTWARE; DETECTOR; BIOSAXS; CURVES;
D O I
10.1107/S1600576723011019
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
BioXTAS RAW is a free open-source program for reduction, analysis and modelling of biological small-angle scattering data. Here, the new developments in RAW version 2 are described. These include improved data reduction using pyFAI; updated automated Guinier fitting and D-max finding algorithms; automated series (e.g. size-exclusion chromatography coupled small-angle X-ray scattering or SEC-SAXS) buffer- and sample-region finding algorithms; linear and integral baseline correction for series; deconvolution of series data using regularized alternating least squares (REGALS); creation of electron-density reconstructions using electron density via solution scattering (DENSS); a comparison window showing residuals, ratios and statistical comparisons between profiles; and generation of PDF reports with summary plots and tables for all analysis. Furthermore, there is now a RAW API, which can be used without the graphical user interface (GUI), providing full access to all of the functionality found in the GUI. In addition to these new capabilities, RAW has undergone significant technical updates, such as adding Python 3 compatibility, and has entirely new documentation available both online and in the program.
引用
收藏
页码:194 / 208
页数:15
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