pyMANGA: A modular, open and extendable software platform for modeling of forest and vegetation dynamics

被引:6
|
作者
Wimmler, Marie-Christin [1 ,3 ]
Bathmann, Jasper [1 ]
Vollhueter, Jonas [2 ]
Berger, Uta [1 ]
机构
[1] TUD Dresden Univ Technol, Inst Forest Growth & Forest Comp Sci, D-01062 Dresden, Germany
[2] Free Univ Berlin, Inst Biol, D-14195 Berlin, Germany
[3] Forest Biometr & Forest Syst Anal, Pienner Str 8, D-01737 Tharandt, Germany
关键词
Benchmarking; Modularity; Reusability; Building blocks; Individual-based modeling; Ecological modeling; SPATIAL-PATTERN; COMPETITION;
D O I
10.1016/j.envsoft.2024.105973
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
Agent-based vegetation models are a widely used tool in ecology, for example, to understand and predict the response of vegetation to environmental change. Models are based on well-established descriptions of processes such as vegetation establishment, growth and mortality. However, they are often developed from scratch, which can be inefficient. Here we present pyMANGA, a free and open-source platform for plant growth modelers. pyMANGA's modular design allows for the combination of different concepts and theories of how plants establish, grow or compete in response to above- and below-ground resource availability. New or alternative modules describing, e.g., competition or facilitation, can be easily added. The interchangeability of modules supports the systematic testing of different hypotheses, e.g., on dominant processes in soil-plant feedback loops. Here we further present the thorough benchmarking strategy to maintain the platform and how pyMANGA can be used to compare models with different levels of abstraction and complexity.
引用
收藏
页数:8
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