Critique of "A Parallel Framework for Constraint-Based Bayesian Network Learning via Markov Blanket Discovery" by SCC Team From Peking University

被引:1
|
作者
Si, Jiaqi [1 ]
Guo, Junyi [1 ]
Hao, Zhewen [1 ]
He, Wenyang [1 ]
Li, Ruihan [1 ]
Pan, Yueyang [1 ]
Fu, Zhenxin [2 ]
Fan, Chun [2 ]
机构
[1] Peking Univ, Sch Elect Engn & Comp Sci EECS, Beijing 100871, Peoples R China
[2] Peking Univ, Comp Ctr, Beijing 100871, Peoples R China
关键词
Computer science; Silicon; Probabilistic logic; Gold; Genomics; Computational modeling; Bioinformatics; Reproducible computation; Student Cluster Competition;
D O I
10.1109/TPDS.2022.3206099
中图分类号
TP301 [理论、方法];
学科分类号
081202 ;
摘要
Ankit Srivastava et al. (Srivastava et al. 2020) proposed a parallel framework for Constraint-Based Bayesian Network (BN) Learning via Markov Blanket Discovery (referred to as ramBLe) and implemented it over three existing BN learning algorithms, namely, GS, IAMB and Inter-IAMB. As part of the Student Cluster Competition at SC21, we reproduce the computational efficiency of ramBLe on our assigned Oracle cluster. The cluster has 4x36 cores in total with 100 Gbps RoCE v2 support and is equipped with CentOS-compatible Oracle Linux. Our experiments, covering the same three algorithms of the original ramBLe article (Srivastava et al. 2020), evaluate the strong and weak scalability of the algorithms using real COVID-19 data sets. We verify part of the conclusions from the original article and propose our explanation of the differences obtained in our results.
引用
收藏
页码:1720 / 1722
页数:3
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