Screening and Validation of Key Genes of Autophagy in Acute Myocardial Infarction Based on Bioinformatics

被引:1
|
作者
Geng, Yingjie [1 ]
Han, Yu'e [2 ]
Wang, Shujuan [1 ]
Qi, Jia [1 ]
Bi, Xiaoli [3 ,4 ]
机构
[1] Zibo Cent Hosp, Dept Cardiol, Zibo, Shandong, Peoples R China
[2] Zibo Cent Hosp, Dept Pulm & Crit Care Med, Zibo, Shandong, Peoples R China
[3] Zibo First Hosp, Dept Cardiol, Zibo, Shandong, Peoples R China
[4] Zibo First Hosp, Dept Cardiol, 4 Emeishan East Rd, Zibo 255200, Shandong, Peoples R China
来源
EVOLUTIONARY BIOINFORMATICS | 2024年 / 20卷
关键词
Acute myocardial infarction; autophagy; bioinformatics; key genes; IDENTIFICATION; INJURY;
D O I
10.1177/11769343241227331
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Aims: Autophagy plays a significant role in the development of acute myocardial infarction (AMI), and cardiomyocyte autophagy is of major importance in maintaining cardiac function. We aimed to identify key genes associated with autophagy in AMI through bioinformatics analysis and verify them through clinical validation.Materials and Methods: We downloaded an AMI expression profile dataset GSE166780 from Gene Expression Omnibus (GEO). Autophagy-associated genes potentially differentially expressed in AMI were screened using R software. Then, to identify key autophagy-related genes, Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis, protein-protein interaction (PPI) analysis, Receiver Operating Characteristic (ROC) curve analysis, and correlation analysis were performed on the differentially expressed autophagy-related genes in AMI. Finally, we used quantificational real-time polymerase chain reaction (qRT-PCR) to verify the RNA expression of the screened key genes.Results: TSC2, HSPA8, and HIF1A were screened out as key autophagy-related genes. qRT-PCR results showed that the expression levels of HSPA8 and TSC2 in AMI blood samples were lower, while the expression level of HIF1A was higher than that in the healthy controls.Conclusions: TSC2, HSPA8, and HIF1A were identified as key autophagy-related genes in this study. They may influence the development of AMI through autophagy. These findings may help deepen our understanding of AMI and may be useful for the treatment of AMI.
引用
收藏
页数:9
相关论文
共 50 条
  • [31] Screening of key pathogenic genes in advanced knee osteoarthritis based on bioinformatics analysis
    Yang, Yongju
    Zhang, Yuqian
    Min, Dongyu
    Yu, Heshan
    Guan, Xuefeng
    ANNALS OF TRANSLATIONAL MEDICINE, 2022, 10 (18)
  • [32] Identification of Key Genes Involved in Acute Myocardial Infarction by Comparative Transcriptome Analysis
    Sheng, Xiaodong
    Fan, Tao
    Jin, Xiaoqi
    BIOMED RESEARCH INTERNATIONAL, 2020, 2020
  • [33] The Activity Of Autophagy Biomarkers In Acute Myocardial Infarction
    Kong, Min Gyu
    Suh, Jon
    Cho, Yoonhaeng
    Park, Hyun Woo
    Lee, Nae Hee
    CIRCULATION RESEARCH, 2023, 133
  • [34] Autophagy biomarkers in patients with acute myocardial infarction
    Kong, M. G.
    Suh, J.
    Cho, Y. H.
    Lee, N. H.
    Park, H. W.
    EUROPEAN HEART JOURNAL, 2022, 43 : 1276 - 1276
  • [35] Identification of key genes involved in myocardial infarction
    Qiu, Linlin
    Liu, Xueqing
    EUROPEAN JOURNAL OF MEDICAL RESEARCH, 2019, 24 (1)
  • [36] Identification of key genes involved in myocardial infarction
    Linlin Qiu
    Xueqing Liu
    European Journal of Medical Research, 24
  • [37] Screening of sphingolipid metabolism-related genes associated with immune cells in myocardial infarction: a bioinformatics analysis
    Wang, Jijuan
    Wang, Ping
    Wang, Weihua
    Jin, Huiling
    JOURNAL OF THORACIC DISEASE, 2022, 14 (08) : 2987 - +
  • [38] Analysis of susceptibility genes and myocardial infarction risk correlation of ischemic cardiomyopathy based on bioinformatics
    Zhang, Nai
    Yang, Chuang
    Liu, Yu-Juan
    Zeng, Peng
    Gong, Tao
    Tao, Lu
    Li, Xin-Ai
    JOURNAL OF THORACIC DISEASE, 2022, 14 (09) : 3445 - 3453
  • [39] Bioinformatics Analysis and Experimental Validation of Mitochondrial Autophagy Genes in Knee Osteoarthritis
    Tang, Kuihan
    Sun, Li
    Chen, Long
    Feng, Xiaobo
    Wu, Jiarui
    Guo, Hao
    Zheng, Yong
    INTERNATIONAL JOURNAL OF GENERAL MEDICINE, 2024, 17 : 639 - 650
  • [40] Screening of key genes related to autophagy in psoriasis based on gene expression profiling
    Mo, S.
    Cao, C.
    Dai, X.
    Ding, Z.
    Zuo, Y.
    Song, C.
    Cheng, X.
    JOURNAL OF INVESTIGATIVE DERMATOLOGY, 2023, 143 (05) : S147 - S147