Do Machine-Learning Atomic Descriptors and Order Parameters Tell the Same The Case of Liquid Water

被引:6
|
作者
Donkor, Edward Danquah [1 ,2 ]
Laio, Alessandro [2 ]
Hassanali, Ali [1 ]
机构
[1] Abdus Salam Int Ctr Theoret Phys ICTP, I-34151 Trieste, Italy
[2] Scuola Int Super Studi Avanzati SISSA, I-34136 Trieste, Italy
基金
欧洲研究理事会;
关键词
DYNAMICS; NETWORK;
D O I
10.1021/acs.jctc.2c01205
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Machine-learning (ML) has become a key workhorse in molecular simulations. Building an ML model in this context involves encoding the information on chemical environments using local atomic descriptors. In this work, we focus on the Smooth Overlap of Atomic Positions (SOAP) and their application in studying the properties of liquid water both in the bulk and at the hydrophobic air-water interface. By using a statistical test aimed at assessing the relative information content of different distance measures defined on the same data space, we investigate if these descriptors provide the same information as some of the common order parameters that are used to characterize local water structure such as hydrogen bonding, density, or tetrahedrality to name a few. Our analysis suggests that the ML description and the standard order parameters of the local water structure are not equivalent. In particular, a combination of these order parameters probing local water environments can predict SOAP similarity only approximately, and vice versa, the environments that are similar according to SOAP are not necessarily similar according to the standard order parameters. We also elucidate the role of some of the metaparameters in the SOAP definition in encoding chemical information.
引用
收藏
页码:4596 / 4605
页数:10
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