Neuromuscular disease genetics in under-represented populations: increasing data diversity

被引:9
|
作者
Wilson, Lindsay A. [1 ,2 ]
Macken, William L. [1 ,2 ]
Perry, Luke D. [3 ,4 ,5 ]
Record, Christopher J. [1 ,2 ]
Schon, Katherine [6 ]
Frezatti, Rodrigo S. S. [7 ]
Raga, Sharika [8 ,9 ]
Naidu, Kireshnee [10 ,11 ]
Koken, Ozlem Yayici [12 ]
Polat, Ipek [13 ,14 ]
Kapapa, Musambo M. [15 ,16 ]
Dominik, Natalia [1 ,2 ]
Efthymiou, Stephanie [1 ,2 ]
Morsy, Heba [1 ,2 ]
Nel, Melissa [8 ,10 ]
Fassad, Mahmoud R. [17 ]
Gao, Fei [6 ]
Patel, Krutik [17 ]
Schoonen, Maryke [18 ]
Bisschoff, Michelle [18 ]
Vorster, Armand [18 ]
Jonvik, Hallgeir [1 ,2 ]
Human, Ronel [19 ]
Lubbe, Elsa [19 ]
Nonyane, Malebo [19 ]
Vengalil, Seena [20 ]
Nashi, Saraswati [20 ]
Srivastava, Kosha [20 ]
Lemmers, Richard J. L. F. [21 ]
Reyaz, Alisha [22 ]
Mishra, Rinkle [22 ]
Topf, Ana [23 ,24 ]
Trainor, Christina I. [23 ,24 ]
Steyn, Elizabeth C. [10 ]
Mahungu, Amokelani C. [10 ]
van der Vliet, Patrick J. [21 ]
Ceylan, Ahmet Cevdet [25 ,26 ]
Hiz, A. Semra [13 ,27 ]
Cavdarli, Busranur
Gunduz, C. Nur Semerci [25 ,26 ]
Ceylan, Gulay Gulec [25 ,26 ]
Nagappa, Madhu
Tallapaka, Karthik B. [28 ]
Govindaraj, Periyasamy [29 ]
van der Maarel, Silvere M. [21 ]
Narayanappa, Gayathri [30 ]
Nandeesh, Bevinahalli N. [30 ]
Somwe, Somwe Wa [31 ]
Bearden, David R. [32 ,33 ]
Kvalsund, Michelle P. [33 ,34 ]
机构
[1] UCL Queen Sq Inst Neurol, Dept Neuromuscular Dis, London WC1N 3BG, England
[2] Natl Hosp Neurol & Neurosurg, London WC1N 3BG, England
[3] UCL, Inst Child Hlth, London WC1N 3JH, England
[4] UCL, Ctr Neuromuscular Dis, Dubowitz Neuromuscular Ctr, Neurosci Unit,UCL Great Ormond St,Great Ormond St, London WC1N 3JH, England
[5] UCL, NIHR Great Ormond St Hosp, Biomed Res Ctr, UCL Great Ormond St,Inst Child Hlth, London WC1N 1EH, England
[6] Univ Cambridge, Dept Clin Neurosci, Cambridge CB2 0QQ, England
[7] Univ Sao Paulo, Dept Neurosci, Sch Med Ribeirao Preto, Sao Paulo, Brazil
[8] Univ Cape Town, Neurosci Inst, Cape Town, South Africa
[9] Red Cross War Mem Childrens Hosp, Div Paediat Neurol, Dept Paediat & Child Hlth, Cape Town, South Africa
[10] Univ Cape Town, Neurol Res Grp, Div Neurol, Dept Med, Cape Town, South Africa
[11] Univ Stellenbosch, Div Neurol, Dept Med, Cape Town, South Africa
[12] Akdeniz Univ, Dept Pediat Neurol, Fac Med, Antalya, Turkiye
[13] Dokuz Eylul Univ, Pediat Neurol Dept, Fac Med, Izmir, Turkiye
[14] Dokuz Eylul Univ, Izmir Int Biomed & Genome Inst, Izmir, Turkiye
[15] Univ Zambia, Dept Physiotherapy, Sch Hlth Sci, Lusaka, Zambia
[16] Univ Teaching Hosp Neurol Res Off, Lusaka, Zambia
[17] Newcastle Univ, Wellcome Ctr Mitochondrial Res, Translat & Clin Res Inst, Fac Med Sci, Newcastle Upon Tyne NE2 4HH, England
[18] North West Univ, Focus Area Human Metabol, Potchefstroom, South Africa
[19] Univ Pretoria, Steve Biko Acad Hosp, Dept Paediat, Pretoria, South Africa
[20] Natl Inst Mental Hlth & Neurosci NIMHANS, Dept Neurol, Bengaluru, India
[21] Leiden Univ Med Ctr LUMC, Dept Human Genet, Leiden, Netherlands
[22] All India Inst Med Sci AIIMS, Dept Neurol, Delhi, India
[23] Newcastle Univ Translat & Clin Res Inst, John Walton Muscular Dystrophy Res Ctr, Newcastle Upon Tyne, England
[24] Newcastle Hosp NHS Fdn Trust, Newcastle Upon Tyne, England
[25] Ankara Bilkent City Hosp, Dept Med Genet, Ankara, Turkiye
[26] Ankara Yildirim Beyazit Univ, Dept Med Genet, Fac Med, Ankara, Turkiye
[27] Izmir Biomed & Genome Ctr, Izmir, Turkiye
[28] CSIR Ctr Cellular & Mol Biol CCMB, Hyderabad, Telangana, India
[29] Ctr DNA Fingerprinting & Diagnost, Div Diagnost, Hyderabad, Telangana, India
[30] Natl Inst Mental Hlth & Neurosci NIMHANS, Dept Neuropathol, Bengaluru, India
[31] Univ Lusaka, Sch Med & Hlth Sci, Dept Clin Sci, Lusaka, Zambia
[32] Univ Zambia, Dept Educ Psychol, Lusaka, Zambia
[33] Univ Rochester, Sch Med & Dent, Dept Neurol, Med Ctr, Rochester, NY 14642 USA
[34] Univ Zambia, Dept Internal Med, Sch Med, Lusaka, Zambia
[35] Yeditepe Univ Hosp, Istanbul, Turkiye
[36] Newcastle Tyne Hosp NHS Fdn Trust, NHS Highly Specialised Serv Rare Mitochondrial Di, Newcastle Upon Tyne NE1 4LP, England
[37] Nizams Inst Med Sci NIMS, Dept Neurol, Hyderabad, Telangana, India
关键词
genomic medicine; inherited neuromuscular disease; capacity building; low-to-middle income country; equality and diversity; MUSCULAR-DYSTROPHY; SUBTYPES; MYOPATHIES; FREQUENCY;
D O I
10.1093/brain/awad254
中图分类号
R74 [神经病学与精神病学];
学科分类号
摘要
Neuromuscular diseases (NMDs) affect similar to 15 million people globally. In high income settings DNA-based diagnosis has transformed care pathways and led to gene-specific therapies. However, most affected families are in low-to-middle income countries (LMICs) with limited access to DNA-based diagnosis. Most (86%) published genetic data is derived from European ancestry. This marked genetic data inequality hampers understanding of genetic diversity and hinders accurate genetic diagnosis in all income settings. We developed a cloud-based transcontinental partnership to build diverse, deeply-phenotyped and genetically characterized cohorts to improve genetic architecture knowledge, and potentially advance diagnosis and clinical management.We connected 18 centres in Brazil, India, South Africa, Turkey, Zambia, Netherlands and the UK. We co-developed a cloud-based data solution and trained 17 international neurology fellows in clinical genomic data interpretation. Single gene and whole exome data were analysed via a bespoke bioinformatics pipeline and reviewed alongside clinical and phenotypic data in global webinars to inform genetic outcome decisions.We recruited 6001 participants in the first 43 months. Initial genetic analyses 'solved' or 'possibly solved' similar to 56% probands overall. In-depth genetic data review of the four commonest clinical categories (limb girdle muscular dystrophy, inherited peripheral neuropathies, congenital myopathy/muscular dystrophies and Duchenne/Becker muscular dystrophy) delivered a similar to 59% 'solved' and similar to 13% 'possibly solved' outcome. Almost 29% of disease causing variants were novel, increasing diverse pathogenic variant knowledge. Unsolved participants represent a new discovery cohort. The dataset provides a large resource from under-represented populations for genetic and translational research.In conclusion, we established a remote transcontinental partnership to assess genetic architecture of NMDs across diverse populations. It supported DNA-based diagnosis, potentially enabling genetic counselling, care pathways and eligibility for gene-specific trials. Similar virtual partnerships could be adopted by other areas of global genomic neurological practice to reduce genetic data inequality and benefit patients globally. Wilson et al. present the findings of an international partnership established to study genetic causes of neuromuscular diseases in under-represented diverse populations from 12 low-middle income sites. A genetic cause was identified in similar to 55% of cases and similar to 30% of variants were novel, improving understanding of neuromuscular disease genetics.
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收藏
页码:5098 / 5109
页数:12
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