Interrogating the Function of Bicistronic Translational Control Elements to Improve Consistency of Gene Expression

被引:3
|
作者
Jansen, Zachary [1 ]
Reilly, Sophia R. [2 ]
Lieber-Kotz, Matan [2 ]
Li, Andrew Z. [3 ]
Wei, Qiyao [4 ]
Kulhanek, Devon L. [2 ]
Gilmour, Andrew R. [1 ]
Thyer, Ross [2 ]
机构
[1] Rice Univ, Syst Synthet & Phys Biol, Houston, TX 77030 USA
[2] Rice Univ, Dept Chem & Biomol Engn, Houston, TX 77030 USA
[3] Rice Univ, Dept Stat, Houston, TX 77030 USA
[4] Rice Univ, Dept Bioengn, Houston, TX 77030 USA
来源
ACS SYNTHETIC BIOLOGY | 2023年 / 12卷 / 06期
关键词
translation; ribosome binding sites; syntheticbiology; golden gate assembly; nonmodel bacteria; Rhodococcus; ESCHERICHIA-COLI; MESSENGER-RNA; INITIATION; STANDARD; DESIGN; SYSTEM;
D O I
10.1021/acssynbio.3c00093
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Context independent gene expression is required for geneticcircuitsto maintain consistent and predicable behavior. Previous efforts todevelop context independent translation have leveraged the helicaseactivity of translating ribosomes via bicistronic design translationalcontrol elements (BCDs) located within an efficiently translated leaderpeptide. We have developed a series of bicistronic translational controlelements with strengths that span several orders of magnitude, maintainconsistent expression levels across diverse sequence contexts, andare agnostic to common ligation sequences used in modular cloningsystems. We have used this series of BCDs to investigate several featuresof this design, including the spacing of the start and stop codons,the nucleotide identity upstream of the start codon, and factors affectingtranslation of the leader peptide. To demonstrate the flexibilityof this architecture and their value as a generic modular expressioncontrol cassette for synthetic biology, we have developed a set ofrobust BCDs for use in several Rhodococcus species.
引用
收藏
页码:1608 / 1615
页数:8
相关论文
共 50 条
  • [41] Transcriptional and translational control of gene expression in cauliflower mosaic virus
    Hohn, Thomas
    Fuetterer, Johannes
    CURRENT OPINION IN GENETICS & DEVELOPMENT, 1992, 2 (01) : 90 - 96
  • [42] Cooperative translational control of gene expression by Ras and Akt in cancer
    Parsa, AT
    Holland, EC
    TRENDS IN MOLECULAR MEDICINE, 2004, 10 (12) : 607 - 613
  • [43] Translational control is a major contributor to hypoxia induced gene expression
    van den Beucken, Twan
    Magagnin, Michael G.
    Jutten, Barry
    Seigneuric, Renaud
    Lambin, Philippe
    Koritzinsky, Marianne
    Wouters, Bradly G.
    RADIOTHERAPY AND ONCOLOGY, 2011, 99 (03) : 379 - 384
  • [44] TRANSLATIONAL CONTROL OF GENE-EXPRESSION IN THE HUMAN-BRAIN
    LANGSTROM, N
    ERIKSSON, A
    WINBLAD, B
    WALLACE, W
    PROGRESS IN NEURO-PSYCHOPHARMACOLOGY & BIOLOGICAL PSYCHIATRY, 1989, 13 (3-4): : 469 - 479
  • [45] ATM regulates radiation -induced translational control of gene expression
    Lehman, Stacey L.
    Wahba, Amy
    Camphausen, Kevin
    Tofilon, Philip J.
    CANCER RESEARCH, 2016, 76
  • [46] Translational control of gene expression: a molecular switch for memory storage
    Costa-Mattioli, Mauro
    Sonenberg, Nahum
    ESSENCE OF MEMORY, 2008, 169 : 81 - 95
  • [47] WHEP domains direct noncanonical function of glutamyl-prolyl tRNA synthetase in translational control of gene expression
    Jia, Jie
    Arif, Abul
    Ray, Partho S.
    Fox, Paul L.
    MOLECULAR CELL, 2008, 29 (06) : 679 - 690
  • [48] A functional screen for regulatory elements that improve retroviral vector gene expression
    Groth, Amy C.
    Emery, David W.
    BLOOD CELLS MOLECULES AND DISEASES, 2010, 45 (04) : 343 - 350
  • [49] Acute perturbation strategies in interrogating RNA polymerase II elongation factor function in gene expression
    Zheng, Bin
    Aoi, Yuki
    Shah, Avani P.
    Iwanaszko, Marta
    Das, Siddhartha
    Rendleman, Emily J.
    Zha, Didi
    Khan, Nabiha
    Smith, Edwin R.
    Shilatifard, Ali
    GENES & DEVELOPMENT, 2021, 35 (3-4)
  • [50] Translational control of gene function through optically regulated nucleic acids
    Darrah, Kristie E.
    Deiters, Alexander
    CHEMICAL SOCIETY REVIEWS, 2021, 50 (23) : 13253 - 13267