Integrating Computation, Experiment, and Machine Learning in the Design of Peptide-Based Supramolecular Materials and Systems

被引:32
|
作者
Ramakrishnan, Maithreyi [1 ,2 ,3 ]
van Teijlingen, Alexander [4 ]
Tuttle, Tell [4 ]
Ulijn, R. V. [1 ,2 ,5 ,6 ]
机构
[1] CUNY, Adv Sci Res Ctr ASRC Grad Ctr, New York, NY 10031 USA
[2] CUNY, Hunter Coll, Dept Chem, New York, NY 10065 USA
[3] CUNY, Grad Ctr, Ph D Program Chem, New York, NY 10016 USA
[4] Univ Strathclyde, Pure & Appl Chem, 295 Cathedral St, Glasgow G11XL, Scotland
[5] CUNY, Grad Ctr, Ph D Program Chem, New York, NY 10016 USA
[6] CUNY, PhD program Biochem, Grad Ctr, New York, NY 10016 USA
关键词
Computation; Molecular Dynamics; Peptides; Self-Assembly; Supramolecular Chemistry; SELF-COMPLEMENTARY OLIGOPEPTIDE; NANOSTRUCTURED HYDROGELS; NANOTUBES; SEQUENCE; DIPHENYLALANINE; MOLECULES; DISCOVERY; LIBRARIES; CHIRALITY; DYNAMICS;
D O I
10.1002/anie.202218067
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Interest in peptide-based supramolecular materials has grown extensively since the 1980s and the application of computational methods has paralleled this. These methods contribute to the understanding of experimental observations based on interactions and inform the design of new supramolecular systems. They are also used to virtually screen and navigate these very large design spaces. Increasingly, the use of artificial intelligence is employed to screen far more candidates than traditional methods. Based on a brief history of computational and experimentally integrated investigations of peptide structures, we explore recent impactful examples of computationally driven investigation into peptide self-assembly, focusing on recent advances in methodology development. It is clear that the integration between experiment and computation to understand and design new systems is becoming near seamless in this growing field.
引用
收藏
页数:20
相关论文
共 50 条
  • [21] Peptide-based supramolecular hydrogels for local drug delivery
    Zhang, Zhenghao
    Ai, Sifan
    Yang, Zhimou
    Li, Xingyi
    ADVANCED DRUG DELIVERY REVIEWS, 2021, 174 : 482 - 503
  • [22] Tuning of the Supramolecular Helicity of Peptide-Based Gel Nanofibers
    Misra, Souvik
    Singh, Pijush
    Singh, Ajeet Kumar
    Roy, Lisa
    Kuila, Soumen
    Dey, Sukantha
    Mahapatra, Ajit K.
    Nanda, Jayanta
    JOURNAL OF PHYSICAL CHEMISTRY B, 2022, 126 (51): : 10882 - 10892
  • [23] Peptide-based materials for cancer immunotherapy
    Zhang, Lu
    Huang, Yanyu
    Lindstrom, Aaron Raymond
    Lin, Tzu-Yin
    Lam, Kit S.
    Li, Yuanpei
    THERANOSTICS, 2019, 9 (25): : 7807 - 7825
  • [24] Peptide-Based Supramolecular Therapeutics for Fighting Major Diseases
    Wang, Zhongyan
    Luo, Hongjing
    Wang, Heping
    Xiao, Meng
    Jia, Haixue
    Ren, Chunhua
    Liu, Jianfeng
    ADVANCED FUNCTIONAL MATERIALS, 2024, 34 (25)
  • [25] Peptide-based porous materials and their applications
    Wang, Yuefei
    Min, Jiwei
    Wei, Hao
    Liu, Jiayu
    Liang, Yaoyu
    Su, Rongxin
    Zhang, Gong
    Zhang, Wei
    Wang, Y.
    Qi, Wei
    SCIENCE CHINA-MATERIALS, 2023, 66 (02) : 470 - 484
  • [26] In and out: Trafficking of peptide-based materials
    Schepartz, Alanna
    FASEB JOURNAL, 2011, 25
  • [27] Peptide-Based Molecular Hydrogels as Supramolecular Protein Mimics
    Singh, Nishant
    Kumar, Mohit
    Miravet, Juan F.
    Ulijn, Rein V.
    Escuder, Beatriu
    CHEMISTRY-A EUROPEAN JOURNAL, 2017, 23 (05) : 981 - 993
  • [28] Peptide-based drug design - Preface
    Gozes, I
    CURRENT PHARMACEUTICAL DESIGN, 2003, 9 (06)
  • [29] Design of peptide-based vaccines for cancer
    Pietersz, G. A.
    Pouniotis, D. S.
    Apostolopoulos, V.
    CURRENT MEDICINAL CHEMISTRY, 2006, 13 (14) : 1591 - 1607
  • [30] The challenge for materials design - Integrating modeling and computation
    Hartley, CS
    METALLIC MATERIALS WITH HIGH STRUCTURAL EFFICIENCY, 2004, 146 : 21 - 32