Establishment of a diagnostic model based on immune-related genes in children with asthma

被引:1
|
作者
Yuan, Yuyun [1 ]
Zhu, Honghua [2 ]
Huang, Sihong [1 ]
Zhang, Yantao [1 ]
Shen, Yiyun [1 ,3 ]
机构
[1] Shanghai Baoshan Hosp Integrated Tradit Chinese &, Dept Pediat, Shanghai 201999, Peoples R China
[2] Shanghai Seventh Peoples Hosp, Dept Med Imaging, Shanghai 200137, Peoples R China
[3] Shanghai Baoshan Hosp Integrated Tradit Chinese &, Dept Pediat, 181 Youyi Rd, Shanghai 201999, Peoples R China
关键词
Childhood asthma; Diagnosis; Immune cells; Pathways; ATOPIC ASTHMA; IL2RB GENES; T-CELLS; EXPRESSION; ASSOCIATION; CHILDHOOD; POLYMORPHISMS; PROFILES; RISK; INFLAMMATION;
D O I
10.1016/j.heliyon.2024.e25735
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Objective: Allergic asthma is driven by an antigen -specific immune response. This study aimed to identify immune -related differentially expressed genes in childhood asthma and establish a classification diagnostic model based on these genes. Methods: GSE65204 and GSE19187 were downloaded and served as training set and validation set. The immune cell composition was evaluated with ssGSEA algorithm based on the immunerelated gene set. Modules that significantly related to the asthma were selected by WGCNA algorithm. The immune -related differentially expressed genes (DE-IRGs) were screened, the protein -protein interaction network and diagnostic model of DE-IRGs was constructed. The pathway and immune correlation analysis of hub DE-IRGs was analyzed. Results: Eight immune cell types exhibited varying levels of abundance between the asthma and control groups. A total of 112 differentially expressed immune -related genes (DE-IRGs) was identified. Through the application of four ranking methods (MCC, MNC, DEGREE, and EPC), 17 hub DE-IRGs with overlapping significance were further selected. Subsequently, 8 optimized were identified using univariate logistic regression analysis and the LASSO regression algorithm, based on which a robust diagnostic model was constructed. Notably, TNF and CD40LG emerged as direct participants in asthma -related signaling pathways, displaying a positive correlation with the immune cell types of immature B cells, activated B cells, activated CD8 T cells, activated CD4 T cells, and myeloid -derived suppressor cells. Conclusion: The diagnostic model constructed using the DE-IRGs (CCL5, CCR5, CD40LG, CD8A, IL2RB, PDCD1, TNF, and ZAP70) exhibited high and specific diagnostic value for childhood asthma. The diagnostic model may contribute to the diagnosis of childhood asthma.
引用
收藏
页数:13
相关论文
共 50 条
  • [21] Altered Expression of Immune-Related Genes in Children with Down Syndrome
    Zampieri, Bruna Lancia
    Biselli-Perico, Joice Matos
    Santana de Souza, Jorge Estefano
    Buerger, Matheus Carvalho
    Silva Junior, Wilson Araujo
    Goloni-Bertollo, Eny Maria
    Pavarino, Erika Cristina
    PLOS ONE, 2014, 9 (09):
  • [22] Diagnostic and Predictive Value of Immune-Related Genes in Crohn's Disease
    Yu, Bing
    Yin, Yi-xin
    Tang, Yan-ping
    Wei, Kang-lai
    Pan, Zhi-gang
    Li, Ke-Zhi
    Guo, Xian-wen
    Hu, Bang-li
    FRONTIERS IN IMMUNOLOGY, 2021, 12
  • [23] Identification and Validation of Immune-Related Genes Diagnostic for Progression of Atherosclerosis and Diabetes
    Fu, Yajuan
    Xu, Lingbo
    Zhang, Hui
    Ding, Ning
    Zhang, Juan
    Ma, Shengchao
    Yang, Anning
    Hao, Yinjv
    Gao, Yujing
    Jiang, Yideng
    JOURNAL OF INFLAMMATION RESEARCH, 2023, 16 : 505 - 521
  • [24] Identification of Methylation Immune Subtypes and Establishment of a Prognostic Signature for Gliomas Using Immune-Related Genes
    Hu, Zhengang
    Zhang, Hao
    Fan, Fan
    Wang, Zeyu
    Xu, Jiahao
    Huang, Yunying
    Dai, Ziyu
    Cao, Hui
    Zhang, Xun
    Liu, Zhixiong
    Cheng, Quan
    FRONTIERS IN IMMUNOLOGY, 2021, 12
  • [25] Immune infiltration and diagnostic value of immune-related genes in periodontitis using bioinformatics analysis
    Lai, Donglin
    Ma, Wenhao
    Wang, Jie
    Zhang, Luzhu
    Shi, Junfeng
    Lu, Changlian
    Gu, Xuefeng
    JOURNAL OF PERIODONTAL RESEARCH, 2023, 58 (02) : 369 - 380
  • [26] Screening of primary open-angle glaucoma diagnostic markers based on immune-related genes and immune infiltration
    Suo, Lingge
    Dai, Wanwei
    Qin, Xuejiao
    Li, Guanlin
    Zhang, Di
    Cheng, Tian
    Yao, Taikang
    Zhang, Chun
    BMC GENOMIC DATA, 2022, 23 (01):
  • [27] Screening of primary open-angle glaucoma diagnostic markers based on immune-related genes and immune infiltration
    Lingge Suo
    Wanwei Dai
    Xuejiao Qin
    Guanlin Li
    Di Zhang
    Tian Cheng
    Taikang Yao
    Chun Zhang
    BMC Genomic Data, 23
  • [28] Establishment of an immune-related gene prognostic model for head and neck tumors
    Zhou, F.
    Chen, A. X.
    Lv, H. Y.
    Liang, D. H.
    Yu, H. S.
    JOURNAL OF BIOLOGICAL REGULATORS AND HOMEOSTATIC AGENTS, 2021, 35 (03): : 975 - 986
  • [29] Establishment of an animal model of immune-related adverse events induced by immune checkpoint inhibitors
    Meng, Yuan
    Lv, Yingge
    Shen, Meng
    Yu, Wenwen
    Liu, Yumeng
    Liu, Ting
    Liu, Gen
    Ma, Shiya
    Hui, Zhenzhen
    Ren, Xiubao
    Liu, Liang
    CANCER MEDICINE, 2024, 13 (14):
  • [30] Prognostic model of immune-related genes for patients with hepatocellular carcinoma
    Cai, Qun
    Duan, Jinnan
    Ding, Liang
    FRONTIERS IN SURGERY, 2022, 9