SARS-CoV-2 Non-structural protein 1(NSP1) mutation virulence and natural selection: Evolutionary trends in the six continents

被引:12
|
作者
Ghaleh, Samira Salami [1 ]
Rahimian, Karim [2 ]
Mahmanzar, Mohammadamin [3 ]
Mahdavi, Bahar [4 ]
Tokhanbigli, Samaneh [5 ]
Sisakht, Mahsa Mollapour [6 ]
Farhadi, Amin [7 ]
Bakhtiari, Mahsa Mousakhan [8 ]
Kuehu, Donna Lee [3 ]
Deng, Youping [3 ]
机构
[1] Univ Guilan, Fac Sci, Dept Biol, Rasht, Iran
[2] Tarbiat Modares Univ, Fac Biol Sci, Bioinformat & Computat Omics Lab BioCOOL, Dept Biophys, Tehran, Iran
[3] Univ Hawaii Manoa, John A Burns Sch Med, Dept Quantitat Hlth Sci, Honolulu, HI 96813 USA
[4] ACECR, Royan Inst Biotechnol, Dept Mol Biotechnol, Cell Sci Res Ctr, Esfahan, Iran
[5] Islamic Azad Univ, Fac Adv Sci & Technol, Dept Mol & Cellular Sci, Pharmaceut Sci Branch, Tehran, Iran
[6] Erasmus MC, Dept Biochem, POB 2040, NL-3000 CA Rotterdam, Netherlands
[7] Payame Noor Univ, Dept Biol, Tehran, Iran
[8] Univ Tehran Med Sci, Pediat Cell Therapy Res Ctr, Childrens Med Ctr, Tehran, Iran
关键词
COVID-19; SARS-CoV-2; NSP1; Mutations; Translational inhibition; E87D; RESPIRATORY SYNDROME CORONAVIRUS; NSP1; HOST;
D O I
10.1016/j.virusres.2022.199016
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Objective: Rapid transmission and reproduction of RNA viruses prepare conducive conditions to have a high rate of mutations in their genetic sequence. The viral mutations make adapt the severe acute respiratory syndrome coronavirus 2 in the host environment and help the evolution of the virus then also caused a high mortality rate by the virus that threatens worldwide health. Mutations and adaptation help the virus to escape confrontations that are done against it.Methods: In the present study, we analyzed 6,510,947 sequences of non-structural protein 1 as one of the conserved regions of the virus to find out frequent mutations and substitute amino acids in comparison with the wild type. NSP1 mutations rate divided into continents were different.Results: Based on this continental categorization, E87D in global vision and also in Europe notably increased. The E87D mutation has signed up to January 2022 as the first frequent mutation observed. The remarkable muta-tions, H110Y and R24C have the second and third frequencies, respectively.Conclusion: According to the important role of non-structural protein 1 on the host mRNA translation, developing drug design against the protein could be so hopeful to find more effective ways the control and then treatment of the global pandemic coronavirus disease 2019.
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页数:10
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