Characterization of patients with idiopathic normal pressure hydrocephalus using natural language processing within an electronic healthcare record system

被引:5
|
作者
Funnell, Jonathan P. [1 ,2 ,12 ]
Noor, Kawsar [3 ,4 ]
Khan, Danyal Z. [1 ,2 ]
D'Antona, Linda [2 ,5 ]
Dobson, Richard J. B. [3 ,4 ,6 ,7 ,8 ,9 ]
Hanrahan, John G. [1 ,2 ]
Hepworth, Christopher [10 ]
Moncur, Eleanor M. [2 ,5 ]
Thomas, Benjamin M. [1 ,11 ]
Thorne, Lewis [2 ]
Watkins, Laurence D. [2 ]
Williams, Simon C. [1 ,2 ]
Wong, Wai Keong [4 ,6 ]
Toma, Ahmed K. [2 ,4 ,5 ]
Marcus, Hani J. [1 ,2 ,4 ,5 ]
机构
[1] UCL, Wellcome EPSRC Ctr Intervent & Surg Sci, London, England
[2] Natl Hosp Neurol & Neurosurg, London, England
[3] UCL, Inst Hlth Informat, London, England
[4] Univ Coll London Hosp NHS Fdn Trust, NIHR Biomed Res Ctr, London, England
[5] UCL, UCL Queen Sq Inst Neurol, London, England
[6] UCL, Hlth Data Res UK London, London, England
[7] South London & Maudsley NHS Fdn Trust, NIHR Biomed Res Ctr, London, England
[8] Kings Coll London, London, England
[9] Kings Coll London, Inst Psychiat Psychol & Neurosci IoPPN, Dept Biostat & Hlth Informat, London, England
[10] B Braun Med Ltd, Sheffield, England
[11] B Braun Med AB, Danderyd, Sweden
[12] UCL, London, England
关键词
artificial intelligence; cerebrospinal fluid diversion; machine learning; natural language processing; SHUNT SURGERY;
D O I
10.3171/2022.9.JNS221095
中图分类号
R74 [神经病学与精神病学];
学科分类号
摘要
OBJECTIVE Idiopathic normal pressure hydrocephalus (iNPH) is an underdiagnosed, progressive, and disabling condi-tion. Early treatment is associated with better outcomes and improved quality of life. In this paper, the authors aimed to identify features associated with patients with iNPH using natural language processing (NLP) to characterize this cohort, with the intention to later target the development of artificial intelligence-driven tools for early detection. METHODS The electronic health records of patients with shunt-responsive iNPH were retrospectively reviewed using an NLP algorithm. Participants were selected from a prospectively maintained single-center database of patients under-going CSF diversion for probable iNPH (March 2008-July 2020). Analysis was conducted on preoperative health records including clinic letters, referrals, and radiology reports accessed through CogStack. Clinical features were extracted from these records as SNOMED CT (Systematized Nomenclature of Medicine Clinical Terms) concepts using a named entity recognition machine learning model. In the first phase, a base model was generated using unsupervised training on 1 million electronic health records and supervised training with 500 double-annotated documents. The model was fine-tuned to improve accuracy using 300 records from patients with iNPH double annotated by two blinded assessors. Thematic analysis of the concepts identi-fied by the machine learning algorithm was performed, and the frequency and timing of terms were analyzed to describe this patient group. RESULTS In total, 293 eligible patients responsive to CSF diversion were identified. The median age at CSF diversion was 75 years, with a male predominance (69% male). The algorithm performed with a high degree of precision and recall (F1 score 0.92). Thematic analysis revealed the most frequently documented symptoms related to mobility, cognitive impairment, and falls or balance. The most frequent comorbidities were related to cardiovascular and hematological problems. CONCLUSIONS This model demonstrates accurate, automated recognition of iNPH features from medical records. Opportunities for translation include detecting patients with undiagnosed iNPH from primary care records, with the aim to
引用
收藏
页码:1731 / 1739
页数:9
相关论文
共 50 条
  • [41] IDENTIFY PATIENTS WITH PYRUVATE KINASE DEFICIENCY USING NATURAL LANGUAGE PROCESSING ON ELECTRONIC MEDICAL RECORDS
    Liu, S.
    Shi, L.
    Lin, Y.
    Zhang, Y.
    Hong, D.
    Shao, Y.
    VALUE IN HEALTH, 2020, 23 : S329 - S329
  • [42] Using Natural Language Processing to Accurately Identify Aortic Stenosis in a Large, Integrated Healthcare Delivery System
    Solomon, Matthew D.
    Tabada, Grace
    Allen, Amanda
    Sung, Sue Hee
    Go, Alan S.
    CIRCULATION, 2019, 140
  • [43] Analyzing Electronic Medical Records of Low Vision Patients using a Natural Language Processing Framework
    He, Dongcheng
    Prabhakaran, Tulsi J.
    Wang, Einstina
    Chung, Susana T. L.
    INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE, 2024, 65 (07)
  • [44] Characterization of patients with advanced chronic pancreatitis using natural language processing of radiology reports
    Xie, Fagen
    Chen, Qiaoling
    Zhou, Yichen
    Chen, Wansu
    Bautista, Jemianne
    Nguyen, Emilie T.
    Parker, Rex A.
    Wu, Bechien U.
    PLOS ONE, 2020, 15 (08):
  • [45] Agreement study on gait assessment using a video-assisted rating method in patients with idiopathic normal-pressure hydrocephalus
    Ishikawa, Masatsune
    Yamada, Shigeki
    Yamamoto, Kazuo
    PLOS ONE, 2019, 14 (10):
  • [46] Improving the Identification fi cation of Diabetic Retinopathy and Related Conditions in the Electronic Health Record Using Natural Language Processing Methods
    Harrigian, Keith
    Tran, Diep
    Tang, Tina
    Gonzales, Anthony
    Nagy, Paul
    Kharrazi, Hadi
    Dredze, Mark
    Cai, Cindy X.
    OPHTHALMOLOGY SCIENCE, 2024, 4 (06):
  • [47] Longitudinal analysis of pain in patients with metastatic prostate cancer using natural language processing of medical record text
    Heintzelman, Norris H.
    Taylor, Robert J.
    Simonsen, Lone
    Lustig, Roger
    Anderko, Doug
    Haythornthwaite, Jennifer A.
    Childs, Lois C.
    Bova, George Steven
    JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION, 2013, 20 (05) : 898 - 905
  • [48] NeuroBlu: a natural language processing (NLP) electronic health record (EHR) data analytic tool to generate real-world evidence in mental healthcare
    Patel, R.
    Wee, S. N.
    Ramaswamy, R.
    Thadani, S.
    Guruswamy, G.
    Garg, R.
    Calvanese, N.
    Valko, M.
    Rush, A.
    Renteria, M.
    Sarkar, J.
    Kollins, S.
    EUROPEAN PSYCHIATRY, 2022, 65 : S99 - S100
  • [49] Can Patients with Dementia Be Identified in Primary Care Electronic Medical Records Using Natural Language Processing?
    Maclagan, Laura C. C.
    Abdalla, Mohamed
    Harris, Daniel A. A.
    Stukel, Therese A. A.
    Chen, Branson
    Candido, Elisa
    Swartz, Richard H. H.
    Iaboni, Andrea
    Jaakkimainen, R. Liisa
    Bronskill, Susan E. E.
    JOURNAL OF HEALTHCARE INFORMATICS RESEARCH, 2023, 7 (01) : 42 - 58
  • [50] Can Patients with Dementia Be Identified in Primary Care Electronic Medical Records Using Natural Language Processing?
    Laura C. Maclagan
    Mohamed Abdalla
    Daniel A. Harris
    Therese A. Stukel
    Branson Chen
    Elisa Candido
    Richard H. Swartz
    Andrea Iaboni
    R. Liisa Jaakkimainen
    Susan E. Bronskill
    Journal of Healthcare Informatics Research, 2023, 7 : 42 - 58