Small-molecule discovery through DNA-encoded libraries

被引:65
|
作者
Peterson, Alexander A. [1 ,2 ,3 ]
Liu, David R. [1 ,2 ,3 ]
机构
[1] Broad Inst MIT & Harvard, Merkin Inst Transformat Technol Healthcare, Cambridge, MA 02142 USA
[2] Harvard Univ, Dept Chem & Chem Biol, Cambridge, MA 02138 USA
[3] Harvard Univ, Howard Hughes Med Inst, Cambridge, MA 02138 USA
关键词
SOLUBLE EPOXIDE HYDROLASE; IN-VITRO SELECTION; CHEMICAL LIBRARY; COMBINATORIAL LIBRARY; KINASE INHIBITOR; DRUG DISCOVERY; IDENTIFICATION; RECEPTOR; DESIGN; LIGANDS;
D O I
10.1038/s41573-023-00713-6
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
DNA-encoded library (DEL) technology is a powerful small-molecule discovery platform, offering many advantages over traditional screening methods. Here, Peterson and Liu provide an in-depth review of recent small molecules discovered through DELs, illustrating the versatility, efficiency and broad impact of this technology. The development of bioactive small molecules as probes or drug candidates requires discovery platforms that enable access to chemical diversity and can quickly reveal new ligands for a target of interest. Within the past 15 years, DNA-encoded library (DEL) technology has matured into a widely used platform for small-molecule discovery, yielding a wide variety of bioactive ligands for many therapeutically relevant targets. DELs offer many advantages compared with traditional screening methods, including efficiency of screening, easily multiplexed targets and library selections, minimized resources needed to evaluate an entire DEL and large library sizes. This Review provides accounts of recently described small molecules discovered from DELs, including their initial identification, optimization and validation of biological properties including suitability for clinical applications.
引用
收藏
页码:699 / 722
页数:24
相关论文
共 50 条
  • [41] Selection of DNA-Encoded Small Molecule Libraries Against Unmodified and Non-Immobilized Protein Targets
    Zhao, Peng
    Chen, Zitian
    Li, Yizhou
    Sun, Dawei
    Gao, Yuan
    Huang, Yanyi
    Li, Xiaoyu
    ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2014, 53 (38) : 10056 - 10059
  • [42] Reflections on DNA-encoded chemical libraries
    Lerner, Richard A.
    Neri, Dario
    BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2020, 527 (03) : 757 - 759
  • [43] DNA-encoded chemical libraries of macrocycles
    Connors, William H.
    Hale, Stephen P.
    Terrett, Nicholas K.
    CURRENT OPINION IN CHEMICAL BIOLOGY, 2015, 26 : 42 - 47
  • [44] Using DNA-encoded libraries of fragments for hit discovery of challenging therapeutic targets
    Zhao, Guixian
    Zhu, Mengping
    Li, Yangfeng
    Zhang, Gong
    Li, Yizhou
    EXPERT OPINION ON DRUG DISCOVERY, 2024, 19 (06) : 725 - 740
  • [45] Agonist Discovery for Membrane Proteins on Live Cells by Using DNA-encoded Libraries
    Huang, Yiran
    Hou, Rui
    Lam, Fong Sang
    Jia, Yunxuan
    Zhou, Yu
    He, Xun
    Li, Gang
    Xiong, Feng
    Cao, Yan
    Wang, Dongyao
    Li, Xiaoyu
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2024, 146 (35) : 24638 - 24653
  • [46] Discovery of PqsE Thioesterase Inhibitors for Pseudomonas aeruginosa Using DNA-Encoded Small Molecule Library Screening
    Valastyan, Julie S.
    Tota, Michael R.
    Taylor, Isabelle R.
    Stergioula, Vasiliki
    Hone, Graham A. B.
    Smith, Chari D.
    Henke, Brad R.
    Carson, Kenneth G.
    Bassler, Bonnie L.
    ACS CHEMICAL BIOLOGY, 2020, 15 (02) : 446 - 456
  • [47] How to Develop and Prove High-Efficiency Selection of Ligands from Oligonucleotide Libraries: A Universal Framework for Aptamers and DNA-Encoded Small-Molecule Ligands
    Le, An T. H.
    Krylova, Svetlana M.
    Beloborodov, Stanislav S.
    Wang, Tong Y.
    Hili, Ryan
    Johnson, Philip E.
    Li, Feng
    Veedu, Rakesh N.
    Belyanskaya, Svetlana
    Krylov, Sergey N.
    ANALYTICAL CHEMISTRY, 2021, 93 (13) : 5343 - 5354
  • [48] Addressing Cancer Chemotherapeutic Toxicity, Resistance, and Heterogeneity: Novel Theranostic Use of DNA-Encoded Small Molecule Libraries
    Kolodny, Gerald
    Li, Xiaoyu
    Balk, Steven
    BIOESSAYS, 2018, 40 (10)
  • [49] Isolation of a Small-Molecule Inhibitor of the Antiapoptotic Protein Bcl-xL from a DNA-Encoded Chemical Library
    Melkko, Samu
    Mannocci, Luca
    Dumelin, Christoph E.
    Villa, Alessandra
    Sommavilla, Roberto
    Zhang, Yixin
    Gruetter, Markus G.
    Keller, Nadine
    Jermutus, Lutz
    Jackson, Ronald H.
    Scheuermann, Joerg
    Neri, Dario
    CHEMMEDCHEM, 2010, 5 (04) : 584 - 590
  • [50] Design and Synthesis of Biaryl DNA-Encoded Libraries
    Ding, Yun
    Franklin, G. Joseph
    DeLorey, Jennifer L.
    Centrella, Paolo A.
    Mataruse, Sibongile
    Clark, Matthew A.
    Skinner, Steven R.
    Belyanskaya, Svetlana
    ACS COMBINATORIAL SCIENCE, 2016, 18 (10) : 625 - 629