Small-molecule discovery through DNA-encoded libraries

被引:65
|
作者
Peterson, Alexander A. [1 ,2 ,3 ]
Liu, David R. [1 ,2 ,3 ]
机构
[1] Broad Inst MIT & Harvard, Merkin Inst Transformat Technol Healthcare, Cambridge, MA 02142 USA
[2] Harvard Univ, Dept Chem & Chem Biol, Cambridge, MA 02138 USA
[3] Harvard Univ, Howard Hughes Med Inst, Cambridge, MA 02138 USA
关键词
SOLUBLE EPOXIDE HYDROLASE; IN-VITRO SELECTION; CHEMICAL LIBRARY; COMBINATORIAL LIBRARY; KINASE INHIBITOR; DRUG DISCOVERY; IDENTIFICATION; RECEPTOR; DESIGN; LIGANDS;
D O I
10.1038/s41573-023-00713-6
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
DNA-encoded library (DEL) technology is a powerful small-molecule discovery platform, offering many advantages over traditional screening methods. Here, Peterson and Liu provide an in-depth review of recent small molecules discovered through DELs, illustrating the versatility, efficiency and broad impact of this technology. The development of bioactive small molecules as probes or drug candidates requires discovery platforms that enable access to chemical diversity and can quickly reveal new ligands for a target of interest. Within the past 15 years, DNA-encoded library (DEL) technology has matured into a widely used platform for small-molecule discovery, yielding a wide variety of bioactive ligands for many therapeutically relevant targets. DELs offer many advantages compared with traditional screening methods, including efficiency of screening, easily multiplexed targets and library selections, minimized resources needed to evaluate an entire DEL and large library sizes. This Review provides accounts of recently described small molecules discovered from DELs, including their initial identification, optimization and validation of biological properties including suitability for clinical applications.
引用
收藏
页码:699 / 722
页数:24
相关论文
共 50 条
  • [1] Small-molecule discovery through DNA-encoded libraries
    Alexander A. Peterson
    David R. Liu
    Nature Reviews Drug Discovery, 2023, 22 : 699 - 722
  • [2] Small-molecule discovery from DNA-encoded chemical libraries
    Kleiner, Ralph E.
    Dumelin, Christoph E.
    Liu, David R.
    CHEMICAL SOCIETY REVIEWS, 2011, 40 (12) : 5707 - 5717
  • [3] Design, synthesis and selection of DNA-encoded small-molecule libraries
    Matthew A Clark
    Raksha A Acharya
    Christopher C Arico-Muendel
    Svetlana L Belyanskaya
    Dennis R Benjamin
    Neil R Carlson
    Paolo A Centrella
    Cynthia H Chiu
    Steffen P Creaser
    John W Cuozzo
    Christopher P Davie
    Yun Ding
    G Joseph Franklin
    Kurt D Franzen
    Malcolm L Gefter
    Steven P Hale
    Nils J V Hansen
    David I Israel
    Jinwei Jiang
    Malcolm J Kavarana
    Michael S Kelley
    Christopher S Kollmann
    Fan Li
    Kenneth Lind
    Sibongile Mataruse
    Patricia F Medeiros
    Jeffrey A Messer
    Paul Myers
    Heather O'Keefe
    Matthew C Oliff
    Cecil E Rise
    Alexander L Satz
    Steven R Skinner
    Jennifer L Svendsen
    Lujia Tang
    Kurt van Vloten
    Richard W Wagner
    Gang Yao
    Baoguang Zhao
    Barry A Morgan
    Nature Chemical Biology, 2009, 5 : 647 - 654
  • [4] Design, synthesis and selection of DNA-encoded small-molecule libraries
    Clark, Matthew A.
    Acharya, Raksha A.
    Arico-Muendel, Christopher C.
    Belyanskaya, Svetlana L.
    Benjamin, Dennis R.
    Carlson, Neil R.
    Centrella, Paolo A.
    Chiu, Cynthia H.
    Creaser, Steffen P.
    Cuozzo, John W.
    Davie, Christopher P.
    Ding, Yun
    Franklin, G. Joseph
    Franzen, Kurt D.
    Gefter, Malcolm L.
    Hale, Steven P.
    Hansen, Nils J. V.
    Israel, David I.
    Jiang, Jinwei
    Kavarana, Malcolm J.
    Kelley, Michael S.
    Kollmann, Christopher S.
    Li, Fan
    Lind, Kenneth
    Mataruse, Sibongile
    Medeiros, Patricia F.
    Messer, Jeffrey A.
    Myers, Paul
    O'Keefe, Heather
    Oliff, Matthew C.
    Rise, Cecil E.
    Satz, Alexander L.
    Skinner, Steven R.
    Svendsen, Jennifer L.
    Tang, Lujia
    van Vloten, Kurt
    Wagner, Richard W.
    Yao, Gang
    Zhao, Baoguang
    Morgan, Barry A.
    NATURE CHEMICAL BIOLOGY, 2009, 5 (09) : 647 - 654
  • [5] DNA-Encoded Chemical Libraries: Advancing beyond Conventional Small-Molecule Libraries
    Franzini, Raphael M.
    Neri, Dario
    Scheuermann, Joerg
    ACCOUNTS OF CHEMICAL RESEARCH, 2014, 47 (04) : 1247 - 1255
  • [6] Erratum: Design, synthesis and selection of DNA-encoded small-molecule libraries
    Matthew A Clark
    Raksha A Acharya
    Christopher C Arico-Muendel
    Svetlana L Belyanskaya
    Dennis R Benjamin
    Neil R Carlson
    Paolo A Centrella
    Cynthia H Chiu
    Steffen P Creaser
    John W Cuozzo
    Christopher P Davie
    Yun Ding
    G Joseph Franklin
    Kurt D Franzen
    Malcolm L Gefter
    Steven P Hale
    Nils J V Hansen
    David I Israel
    Jinwei Jiang
    Malcolm J Kavarana
    Michael S Kelley
    Christopher S Kollmann
    Fan Li
    Kenneth Lind
    Sibongile Mataruse
    Patricia F Medeiros
    Jeffrey A Messer
    Paul Myers
    Heather O'Keefe
    Matthew C Oliff
    Cecil E Rise
    Alexander L Satz
    Steven R Skinner
    Jennifer L Svendsen
    Lujia Tang
    Kurt van Vloten
    Richard W Wagner
    Gang Yao
    Baoguang Zhao
    Barry A Morgan
    Nature Chemical Biology, 2009, 5 : 772 - 772
  • [7] Fidelity by design: Yoctoreactor and binder trap enrichment for small-molecule DNA-encoded libraries and drug discovery
    Blakskjaer, Peter
    Heitner, Tara
    Hansen, Nils Jakob Vest
    CURRENT OPINION IN CHEMICAL BIOLOGY, 2015, 26 : 62 - 71
  • [8] DNA-encoded libraries - an efficient small molecule discovery technology for the biomedical sciences
    Kunig, Verena
    Potowski, Marco
    Gohla, Anne
    Brunschweiger, Andreas
    BIOLOGICAL CHEMISTRY, 2018, 399 (07) : 691 - 710
  • [9] High-throughput evaluation of small-molecule catalyst libraries: Development of an amphiphilic, DNA-encoded reaction discovery platform
    Hook, Katherine
    Hili, Ryan
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2017, 253
  • [10] Discovery of the first selective, small-molecule GFRα2/3 inhibitors through DNA-encoded library technology
    Johnson, Shea L.
    Missig, Galen
    Wang, Minghua
    Ouk, Kosalvisal
    Gupta, Kushali
    Nguyen, Hanh Nho
    Toh, May Fern
    Ho, Tammy Szu-Yu
    Gray, David
    Zhang, Hongjun
    Choi-Sledeski, Yong Mi
    Barberis, Claude
    Stone, David J.
    Pin, Sokhom
    Lim, Jongwon
    BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 2024, 110