Oncogenic signaling pathways and hallmarks of cancer in Korean patients with acral melanoma

被引:1
|
作者
Moon, SeongRyeol [1 ]
Kim, Hee Joo [2 ]
Lee, Yeeun [1 ]
Lee, Yu Joo [4 ]
Jung, Sungwon [3 ,4 ]
Lee, Jin Sook [4 ,5 ]
Hahn, Si Houn [5 ]
Kim, Kyungdoc [6 ]
Roh, Joo Young [7 ]
Nam, Seungyoon [1 ,3 ,8 ,9 ]
机构
[1] Gachon Univ, Gachon Adv Inst Hlth Sci & Technol, Dept Hlth Sci & Technol, Incheon 21999, South Korea
[2] Gachon Univ, Coll Med, Dept Dermatol, Gil Med Ctr, Incheon 21565, South Korea
[3] Gachon Univ, Coll Med, Gachon Inst Genome Med & Sci, Dept Genome Med & Sci,Gil Med Ctr, Incheon 21565, South Korea
[4] Seoul Natl Univ Childrens Hosp, Hosp Child Canc & Rare Dis Adm, Dept Pediat, Seoul 03080, South Korea
[5] Univ Washington, Seattle Childrens Hosp, Dept Pediat, Div Genet Med,Sch Med, Seattle, WA 98105 USA
[6] VUNO Inc, Seoul 06536, South Korea
[7] Ewha Womans Univ, Seoul Hosp, Dept Dermatol, Coll Med, 260 Gonghang Daero, Seoul 07804, South Korea
[8] Gachon Univ, AI Convergence Ctr Med Sci, Coll Med, Incheon 21565, South Korea
[9] Gachon Univ, Coll Med, Dokjeom Ro 3Beon-gil, 38-13, Incheon 21565, South Korea
关键词
Acral melanoma; Whole exome sequencing; RNA-Seq; Signaling pathways; MUTATIONS; LANDSCAPE; THERAPY; SIGNATURES; DISCOVERY;
D O I
10.1016/j.compbiomed.2023.106602
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Acral melanoma (AM), a rare subtype of cutaneous melanoma, shows higher incidence in Asians, including Koreans, than in Caucasians. However, the genetic modification associated with AM in Koreans is not well known and has not been comprehensively investigated in terms of oncogenic signaling, and hallmarks of cancer. We performed whole-exome and RNA sequencing for Korean patients with AM and acquired the genetic alterations and gene expression profiles. KIT alterations (previously known to be recurrent alterations in AM) and CDK4/ CCND1 copy number amplifications were identified in the patients. Genetic and transcriptomic alterations in patients with AM were functionally converge to the hallmarks of cancer and oncogenic pathways, including 'proliferative signal persistence', 'apoptotic resistance', and 'activation of invasion and metastasis', despite the heterogeneous somatic mutation profiles of Korean patients with AM. This study may provide a molecular un-derstanding for therapeutic strategy for AM.
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页数:11
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