Replication of the bSTAR sequence and open-source implementation

被引:0
|
作者
Lee, Nam G. [1 ,2 ,5 ]
Bauman, Grzegorz [3 ,4 ]
Bieri, Oliver [3 ,4 ]
Nayak, Krishna S. [1 ,2 ]
机构
[1] Univ Southern Calif, Alfred E Mann Dept Biomed Engn, Los Angeles, CA USA
[2] Univ Southern Calif, Ming Hsieh Dept Elect & Comp Engn, Los Angeles, CA USA
[3] Univ Basel Hosp, Dept Radiol, Div Radiol Phys, Basel, Switzerland
[4] Univ Basel, Dept Biomed Engn, Allschwil, Switzerland
[5] Univ Southern Calif, Alfred E Mann Dept Biomed Engn, Los Angeles, CA 90089 USA
基金
美国国家科学基金会;
关键词
lung MRI; open-source; replication; reproducible research; SHRINKAGE-THRESHOLDING ALGORITHM; SIMULATIONS; QUALITY; STATE;
D O I
10.1002/mrm.29947
中图分类号
R8 [特种医学]; R445 [影像诊断学];
学科分类号
1002 ; 100207 ; 1009 ;
摘要
Purpose: The reproducibility of scientific reports is crucial to advancing human knowledge. This paper is a summary of our experience in replicating a balanced SSFP half-radial dual-echo imaging technique (bSTAR) using open-source frameworks as a response to the 2023 ISMRM "repeat it with me" Challenge.Methods: We replicated the bSTAR technique for thoracic imaging at 0.55T. The bSTAR pulse sequence is implemented in Pulseq, a vendor neutral open-source rapid sequence prototyping environment. Image reconstruction is performed with the open-source Berkeley Advanced Reconstruction Toolbox (BART). The replication of bSTAR, termed open-source bSTAR, is tested by replicating several figures from the published literature. Original bSTAR, using the pulse sequence and image reconstruction developed by the original authors, and open-source bSTAR, with pulse sequence and image reconstruction developed in this work, were performed in healthy volunteers.Results: Both echo images obtained from open-source bSTAR contain no visible artifacts and show identical spatial resolution and image quality to those in the published literature. A direct head-to-head comparison between open-source bSTAR and original bSTAR on a healthy volunteer indicates that open-source bSTAR provides adequate SNR, spatial resolution, level of artifacts, and conspicuity of pulmonary vessels comparable to original bSTAR.Conclusion: We have successfully replicated bSTAR lung imaging at 0.55T using two open-source frameworks. Full replication of a research method solely relying on information on a research paper is unfortunately rare in research, but our success gives greater confidence that a research methodology can be indeed replicated as described.
引用
收藏
页码:1464 / 1477
页数:14
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