Association analysis of production traits of Japanese quail (Coturnix japonica) using restriction-site associated DNA sequencing

被引:0
|
作者
Haqani, Mohammad Ibrahim [1 ]
Nakano, Michiharu [2 ]
Nagano, Atsushi J. [3 ,4 ]
Nakamura, Yoshiaki [1 ,5 ]
Tsudzuki, Masaoki [1 ,5 ]
机构
[1] Hiroshima Univ, Grad Sch Integrated Sci Life, Higashihiroshima, Hiroshima 7398525, Japan
[2] Kochi Univ, Fac Agr & Marine Sci, Nankoku, Kochi 7838502, Japan
[3] Ryukoku Univ, Fac Agr, Otsu, Shiga 5202194, Japan
[4] Keio Univ, Inst Adv Biosci, Yamagata 9970017, Japan
[5] Hiroshima Univ, Japanese Avian Bioresource Project Res Ctr, Higashihiroshima, Hiroshima 7398525, Japan
来源
SCIENTIFIC REPORTS | 2023年 / 13卷 / 01期
关键词
IMAGE SEGMENTATION; U-NET; VORTEX; VORTICES;
D O I
10.1038/s41598-023-48293-0
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
This study was designed to perform an association analysis and identify SNP markers associated with production traits of Japanese quail using restriction-site-associated DNA sequencing. Weekly body weight data from 805 quail were collected from hatching to 16 weeks of age. A total number of 3990 eggs obtained from 399 female quail were used to assess egg quality traits. Egg-related traits were measured at the beginning of egg production (first stage) and at 12 weeks of age (second stage). Five eggs were analyzed at each stage. Traits, such as egg weight, egg length and short axes, eggshell strength and weight, egg equator thickness, yolk weight, diameter, and colour, albumen weight, age of first egg, total number of laid eggs, and egg production rate, were assessed. A total of 383 SNPs and 1151 associations as well as 734 SNPs and 1442 associations were identified in relation to quail production traits using general linear model (GLM) and mixed linear model (MLM) approaches, respectively. The GLM-identified SNPs were located on chromosomes 1-13, 15, 17-20, 24, 26-28, and Z, underlying phenotypic traits, except for egg and albumen weight at the first stage and yolk yellowness at the second stage. The MLM-identified SNPs were positioned on defined chromosomes associated with phenotypic traits except for the egg long axis at the second stage of egg production. Finally, 35 speculated genes were identified as candidate genes for the targeted traits based on their nearest positions. Our findings provide a deeper understanding and allow a more precise genetic improvement of production traits of Galliformes, particularly in Japanese quail.
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页数:17
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