DEEP LEARNING-BASED FEATURE FUSION AND TRANSFER LEARNING FOR APPROXIMATING pIC VALUE OF COVID-19 MEDICINE USING DRUG DISCOVERY DATA

被引:1
|
作者
Dhaygude, Amol dattatray [1 ]
Hasan, Mehadi [2 ]
Vijay, M. [3 ]
机构
[1] Microsoft Corp, Seattle, WA 98104 USA
[2] Univ Alabama Birmingham, Dept Biol, Birmingham, AL 35294 USA
[3] Kalasalingam Acad Res & Educ, Dept CSE, Srivilliputhur, Tamil Nadu, India
关键词
Simplified Molecular Input Line Entry System; Visual Geometry Group Network; Convolutional Neural Network; Lorentzian similarity; Deep Residual Network; ARTIFICIAL-INTELLIGENCE;
D O I
10.1142/S0219519423501002
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
The pandemic disease Coronavirus 2019 (COVID-19) caused thousands of infections and deaths globally. It is important to introduce new medicines to address the critical situation in the medical system. The determination of approximate pIC value is necessary for designing medicines based on molecular compounds. Generally, the approximation of pIC value is a lengthy process, so it is difficult and time-consuming. Hence it is essential to introduce a new technique for automatic approximation. In this research, a Convolutional Neural Network-based transfer learning (CNN-TL) is designed for approximating the pIC value. Initially, Simplified Molecular Input Line Entry System (SMILES) notation is extracted from SMILES string symbols using an entropy-based one-hot encoding matrix and the molecular formula-based encoding. The molecular features are then extracted from the input data using Lorentzian similarity and Deep Residual Network (DRN). The pIC value approximation is performed using the CNN-TL model, where the Visual Geometry Group Network-16 (VGGNet-16) is used to fetch hyperparameters used to initialize the CNN. The experimental results proved that the designed CNN-TL technique achieved minimum error rates with normalized values of 0.406 for R2, 0.516 for Root Mean Square Error (RMSE), 0.267 for Mean Square Error (MSE), and for 0.277 Mean Absolute Percentage Error (MAPE).
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页数:22
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