Estimating Causal Effects using Bayesian Methods with the R Package BayesCACE

被引:0
|
作者
Zhou, Jincheng [1 ]
Yang, Jinhui [2 ]
Hodges, James S. [3 ]
Lin, Lifeng [4 ]
Chu, Haitao [3 ,5 ]
机构
[1] Gilead Inc, Clin Data Sci, Foster City, CA 94404 USA
[2] Univ Minnesota Twin Cities, Dept Comp Sci & Engn, Minneapolis, MN 55455 USA
[3] Univ Minnesota Twin Cities, Sch Publ Hlth, Div Biostat, Minneapolis, MN 55455 USA
[4] Univ Arizona, Mel & Enid Zuckerman Coll Publ Hlth, Dept Epidemiol & Biostat, Tucson, AZ 85724 USA
[5] Pfizer Inc, Stat Res & Data Sci Ctr, New York, NY 10017 USA
来源
R JOURNAL | 2023年 / 15卷 / 01期
关键词
CHAIN MONTE-CARLO; NONCOMPLIANCE; CONVERGENCE; TRIALS; MODELS;
D O I
暂无
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
Noncompliance, a common problem in randomized clinical trials (RCTs), complicates the analysis of the causal treatment effect, especially in meta-analysis of RCTs. The complier average causal effect (CACE) measures the effect of an intervention in the latent subgroup of the population that complies with its assigned treatment (the compliers). Recently, Bayesian hierarchical approaches have been proposed to estimate the CACE in a single RCT and a meta-analysis of RCTs. We develop an R package, BayesCACE, to provide user-friendly functions for implementing CACE analysis for binary outcomes based on the flexible Bayesian hierarchical framework. This package includes functions for analyzing data from a single study and for performing a meta-analysis with either complete or incomplete compliance data. The package also provides various functions for generating forest, trace, posterior density, and auto-correlation plots, which can be useful to review noncompliance rates, visually assess the model, and obtain study-specific and overall CACEs.
引用
收藏
页码:297 / 315
页数:19
相关论文
共 50 条
  • [31] Robust causal inference using directed acyclic graphs: the R package 'dagitty'
    Textor, Johannes
    van der Zander, Benito
    Gilthorpe, Mark S.
    Liskiewicz, Maciej
    Ellison, George T. H.
    [J]. INTERNATIONAL JOURNAL OF EPIDEMIOLOGY, 2016, 45 (06) : 1887 - 1894
  • [32] Estimating causal effects with matching methods in the presence and absence of bias cancellation
    Diprete, TA
    Engelhardt, H
    [J]. SOCIOLOGICAL METHODS & RESEARCH, 2004, 32 (04) : 501 - 528
  • [33] A Bayesian approach to estimating causal vaccine effects on binary post-infection outcomes
    Zhou, Jincheng
    Chu, Haitao
    Hudgens, Michael G.
    Halloran, M. Elizabeth
    [J]. STATISTICS IN MEDICINE, 2016, 35 (01) : 53 - 64
  • [34] A Bayesian procedure for estimating the causal effects of nursing home bed-hold policy
    Gutman, Roee
    Intrator, Orna
    Lancaster, Tony
    [J]. BIOSTATISTICS, 2018, 19 (04) : 444 - 460
  • [35] Local Causal Discovery for Estimating Causal Effects
    Gupta, Shantanu
    Childers, David
    Lipton, Zachary C.
    [J]. CONFERENCE ON CAUSAL LEARNING AND REASONING, VOL 213, 2023, 213 : 408 - 447
  • [36] Brq: an R package for Bayesian quantile regression
    Alhamzawi, Rahim
    Ali, Haithem Taha Mohammad
    [J]. METRON-INTERNATIONAL JOURNAL OF STATISTICS, 2020, 78 (03): : 313 - 328
  • [37] Learning Bayesian Networks with the bnlearn R Package
    Scutari, Marco
    [J]. JOURNAL OF STATISTICAL SOFTWARE, 2010, 35 (03): : 1 - 22
  • [38] BayesMallows: An R Package for the Bayesian Mallows Model
    Sorensen, Oystein
    Crispino, Marta
    Liu, Qinghua
    Vitelli, Valeria
    [J]. R JOURNAL, 2020, 12 (01): : 324 - 342
  • [39] BANOVA: An R Package for Hierarchical Bayesian ANOVA
    Dong, Chen
    Wedel, Michel
    [J]. JOURNAL OF STATISTICAL SOFTWARE, 2017, 81 (09): : 1 - 46
  • [40] Brq: an R package for Bayesian quantile regression
    Rahim Alhamzawi
    Haithem Taha Mohammad Ali
    [J]. METRON, 2020, 78 : 313 - 328