Exome sequencing in a Romanian Bardet-Biedl syndrome cohort revealed an overabundance of causal BBS12 variants

被引:3
|
作者
Khan, Sherazh [1 ,2 ,3 ]
Focsa, Ina Ofelia [4 ,5 ]
Budisteanu, Magdalena [6 ,7 ,8 ]
Stoica, Cristina [4 ,9 ]
Nedelea, Florina [4 ,10 ]
Bohiltea, Laurentiu [4 ]
Caba, Lavinia [11 ]
Butnariu, Lacramioara [11 ,12 ]
Panzaru, Monica [11 ,12 ]
Rusu, Cristina [11 ,12 ]
Jurca, Claudia [13 ,14 ]
Chirita-Emandi, Adela [15 ,16 ]
Banescu, Claudia [17 ]
Abbas, Wasim [2 ,3 ]
Sadeghpour, Azita [18 ,19 ]
Baig, Shahid Mahmood [20 ,21 ]
Balgradean, Mihaela [4 ,22 ]
Davis, Erica E. E. [1 ,23 ,24 ]
机构
[1] Ann & Robert H Lurie Childrens Hosp Chicago, Stanley Manne Childrens Res Inst, Chicago, IL 60611 USA
[2] Natl Inst Biotechnol & Genet Engn NIBGE C, Hlth Biotechnol Div, Human Mol Genet Lab, Faisalabad, Pakistan
[3] Pakistan Inst Engn & Appl Sci PIEAS, Islamabad, Pakistan
[4] Univ Med & Pharm Carol Davila, Bucharest, Romania
[5] Cytogen Med Lab, Bucharest, Romania
[6] Prof Dr Alexandru Obregia Clin Hosp Psychiat, Psychiat Res Lab, Bucharest, Romania
[7] Victor Babes Natl Inst Pathol, Med Genet Lab, Bucharest, Romania
[8] Titu Maiorescu Univ, Fac Med, Dept Med Genet, Bucharest, Romania
[9] Clin Inst Fundeni, Dept Pediat, Bucharest, Romania
[10] Clin Hosp Filantropia, Genet Dept, Bucharest, Romania
[11] Grigore T Popa Univ Med & Pharm, Dept Med Genet, Iasi, Romania
[12] Sf Maria Childrens Hosp, Reg Med Genet Ctr, Iasi, Romania
[13] Univ Oradea, Fac Med & Pharm, Dept Genet, Oradea, Romania
[14] Dr Gavril Curteanu Municipal Clin Hosp, Dept Pediat, Oradea, Romania
[15] Emergency Hosp Children Louis Turcanu, Reg Ctr Med Genet Timis, Timisoara, Romania
[16] Victor Babes Univ Med & Pharm Timisoara, Ctr Genom Med, Dept Microscop Morphol Genet, Timisoara, Romania
[17] George Emil Palade Univ Med Pharm Sci & Technol, Targu Mures, Romania
[18] Duke Univ, Ctr Human Dis Modeling, Med Ctr, Durham, NC USA
[19] Duke Univ, Dept Med,Med Ctr, Duke Precis Med Program, Div Gen Internal Med, Durham, NC USA
[20] Pakistan Sci Fdn PSF, Islamabad, Pakistan
[21] Agha Khan Univ Karachi, Dept Biol & Biomed Sci, Karachi, Pakistan
[22] Emergency Clin Hosp Children Maria Sklodowska Curi, Dept Pediat & Pediat Nephrol, Bucharest, Romania
[23] Northwestern Univ, Feinberg Sch Med, Dept Pediat, Chicago, IL USA
[24] Northwestern Univ, Feinberg Sch Med, Dept Cell & Dev Biol, Chicago, IL USA
关键词
ciliopathy; pleiotropy; polydactyly; retinal dystrophy; second-site modifiers; urogenital malformations; COPY-NUMBER VARIANTS; MUTATIONAL LOAD; COMPLEX; PROTEINS; DISEASE; GENE; IDENTIFICATION; CILIARY; CILIOPATHIES; CONTRIBUTES;
D O I
10.1002/ajmg.a.63322
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Bardet-Biedl syndrome (BBS), is an emblematic ciliopathy hallmarked by pleiotropy, phenotype variability, and extensive genetic heterogeneity. BBS is a rare (similar to 1/140,000 to similar to 1/160,000 in Europe) autosomal recessive pediatric disorder characterized by retinal degeneration, truncal obesity, polydactyly, cognitive impairment, renal dysfunction, and hypogonadism. Twenty-eight genes involved in ciliary structure or function have been implicated in BBS, and explain the molecular basis for similar to 75%-80% of individuals. To investigate the mutational spectrum of BBS in Romania, we ascertained a cohort of 24 individuals in 23 families. Following informed consent, we performed proband exome sequencing (ES). We detected 17 different putative disease-causing single nucleotide variants or small insertion-deletions and two pathogenic exon disruptive copy number variants in known BBS genes in 17 pedigrees. The most frequently impacted genes were BBS12 (35%), followed by BBS4, BBS7, and BBS10 (9% each) and BBS1, BBS2, and BBS5 (4% each). Homozygous BBS12 p.Arg355* variants were present in seven pedigrees of both Eastern European and Romani origin. Our data show that although the diagnostic rate of BBS in Romania is likely consistent with other worldwide cohorts (74%), we observed a unique distribution of causal BBS genes, including overrepresentation of BBS12 due to a recurrent nonsense variant, that has implications for regional diagnostics.
引用
收藏
页码:2376 / 2391
页数:16
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