A review on structural, non-structural, and accessory proteins of SARS-CoV-2: Highlighting drug target sites

被引:21
|
作者
Islam, Md. Jahirul [1 ,2 ]
Islam, Nafisa Nawal [3 ]
Alom, Md. Siddik [4 ]
Kabir, Mahmuda [5 ]
Halim, Mohammad A. [6 ]
机构
[1] BICCB, Div Infect Dis, 16 Tejkunipara, Dhaka 1215, Bangladesh
[2] BICCB, Red Green Res Ctr, Div Comp Aided Drug Design, 16 Tejkunipara, Dhaka 1215, Bangladesh
[3] Jahangirnagar Univ, Dept Biotechnol & Genet Engn, Dhaka 1342, Bangladesh
[4] Ohio State Univ, Ohio State Biochem Program, Columbus, OH 43210 USA
[5] Univ Dhaka, Dept Genet Engn & Biotechnol, Dhaka 1000, Bangladesh
[6] Kennesaw State Univ, Dept Chem & Biochem, 370 Paulding Ave NW, Kennesaw, GA 30144 USA
关键词
RESPIRATORY SYNDROME CORONAVIRUS; PAPAIN-LIKE PROTEASE; SARS-CORONAVIRUS; NUCLEOCAPSID PROTEIN; CRYSTAL-STRUCTURE; DIMERIZATION DOMAIN; SUBSTRATE-SPECIFICITY; MOLECULAR-BASIS; SPIKE PROTEIN; RNA-BINDING;
D O I
10.1016/j.imbio.2022.152302
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the causative agent of COVID-19, is a highly transmittable and pathogenic human coronavirus that first emerged in China in December 2019. The unprecedented outbreak of SARS-CoV-2 devastated human health within a short time leading to a global public health emergency. A detailed understanding of the viral proteins including their structural characteristics and virulence mechanism on human health is very crucial for developing vaccines and therapeutics. To date, over 1800 structures of non-structural, structural, and accessory proteins of SARS-CoV-2 are determined by cryo-electron microscopy, X-ray crystallography, and NMR spectroscopy. Designing therapeutics to target the viral proteins has several benefits since they could be highly specific against the virus while maintaining minimal detrimental effects on humans. However, for ongoing and future research on SARS-CoV-2, summarizing all the viral proteins and their detailed structural information is crucial. In this review, we compile comprehensive information on viral structural, non-structural, and accessory proteins structures with their binding and catalytic sites, different domain and motifs, and potential drug target sites to assist chemists, biologists, and clinicians finding necessary details for fundamental and therapeutic research.
引用
收藏
页数:24
相关论文
共 50 条
  • [21] Structural insights into SARS-CoV-2 proteins
    Arya, Rimanshee
    Kumari, Shweta
    Pandey, Bharati
    Mistry, Hiral
    Bihani, Subhash C.
    Das, Amit
    Prashar, Vishal
    Gupta, Gagan D.
    Panicker, Lata
    Kumar, Mukesh
    JOURNAL OF MOLECULAR BIOLOGY, 2021, 433 (02)
  • [22] ANALYSIS OF THREE NON-STRUCTURAL PROTEINS, NSP1, NSP2, AND NSP10 OF SARS-COV-2 AS PIVOTAL TARGET PROTEINS FOR COMPUTATIONAL DRUG SCREENING
    Putra, Wira Eka
    Sustiprijatno, Arief
    Hidayatullah, Arief
    Heikal, Muhammad Fikri
    Widiastuti, Diana
    Isnanto, Hary
    JOURNAL OF MICROBIOLOGY BIOTECHNOLOGY AND FOOD SCIENCES, 2023, 12 (05):
  • [23] Evolution of SARS-CoV-2 in Spain during the First Two Years of the Pandemic: Circulating Variants, Amino Acid Conservation, and Genetic Variability in Structural, Non-Structural, and Accessory Proteins
    Troyano-Hernaez, Paloma
    Reinosa, Roberto
    Holguin, Africa
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, 23 (12)
  • [24] Structural and non-structural proteins in SARS-CoV-2: potential aspects to COVID-19 treatment or prevention of progression of related diseases
    Kakavandi, Sareh
    Zare, Iman
    VaezJalali, Maryam
    Dadashi, Masoud
    Azarian, Maryam
    Akbari, Abdullatif
    Ramezani Farani, Marzieh
    Zalpoor, Hamidreza
    Hajikhani, Bahareh
    CELL COMMUNICATION AND SIGNALING, 2023, 21 (01)
  • [25] Structural and non-structural proteins in SARS-CoV-2: potential aspects to COVID-19 treatment or prevention of progression of related diseases
    Sareh Kakavandi
    Iman Zare
    Maryam VaezJalali
    Masoud Dadashi
    Maryam Azarian
    Abdullatif Akbari
    Marzieh Ramezani Farani
    Hamidreza Zalpoor
    Bahareh Hajikhani
    Cell Communication and Signaling, 21
  • [26] Identification, Characterization and Drug Discovery for Novel Target Sites for SARS-CoV-2 Proteins
    Iyengar, Suhasini
    Barnsley, Kelton
    Hoang Yen Vu
    Herrod, Alyssa
    Bongalonta, Ian
    Scott, Jasmine
    Beuning, Penny
    Ondrechen, Mary Jo
    FASEB JOURNAL, 2021, 35
  • [27] Structural, energetic and lipophilic analysis of SARS-CoV-2 non-structural protein 9 (NSP9)
    Araujo, Jessica de O.
    Pinheiro, Silvana
    Zamora, William J.
    Alves, Claudio Nahum
    Lameira, Jeronimo
    Lima, Anderson H.
    SCIENTIFIC REPORTS, 2021, 11 (01)
  • [28] Structural insights into ribonucleoprotein dissociation by nucleocapsid protein interacting with non-structural protein 3 in SARS-CoV-2
    Ni, Xincheng
    Han, Yinze
    Zhou, Renjie
    Zhou, Yanmei
    Lei, Jian
    COMMUNICATIONS BIOLOGY, 2023, 6 (01)
  • [29] Structural insights into ribonucleoprotein dissociation by nucleocapsid protein interacting with non-structural protein 3 in SARS-CoV-2
    Xincheng Ni
    Yinze Han
    Renjie Zhou
    Yanmei Zhou
    Jian Lei
    Communications Biology, 6
  • [30] Structural, energetic and lipophilic analysis of SARS-CoV-2 non-structural protein 9 (NSP9)
    Jéssica de O. Araújo
    Silvana Pinheiro
    William J. Zamora
    Cláudio Nahum Alves
    Jerônimo Lameira
    Anderson H. Lima
    Scientific Reports, 11