A review on structural, non-structural, and accessory proteins of SARS-CoV-2: Highlighting drug target sites

被引:21
|
作者
Islam, Md. Jahirul [1 ,2 ]
Islam, Nafisa Nawal [3 ]
Alom, Md. Siddik [4 ]
Kabir, Mahmuda [5 ]
Halim, Mohammad A. [6 ]
机构
[1] BICCB, Div Infect Dis, 16 Tejkunipara, Dhaka 1215, Bangladesh
[2] BICCB, Red Green Res Ctr, Div Comp Aided Drug Design, 16 Tejkunipara, Dhaka 1215, Bangladesh
[3] Jahangirnagar Univ, Dept Biotechnol & Genet Engn, Dhaka 1342, Bangladesh
[4] Ohio State Univ, Ohio State Biochem Program, Columbus, OH 43210 USA
[5] Univ Dhaka, Dept Genet Engn & Biotechnol, Dhaka 1000, Bangladesh
[6] Kennesaw State Univ, Dept Chem & Biochem, 370 Paulding Ave NW, Kennesaw, GA 30144 USA
关键词
RESPIRATORY SYNDROME CORONAVIRUS; PAPAIN-LIKE PROTEASE; SARS-CORONAVIRUS; NUCLEOCAPSID PROTEIN; CRYSTAL-STRUCTURE; DIMERIZATION DOMAIN; SUBSTRATE-SPECIFICITY; MOLECULAR-BASIS; SPIKE PROTEIN; RNA-BINDING;
D O I
10.1016/j.imbio.2022.152302
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the causative agent of COVID-19, is a highly transmittable and pathogenic human coronavirus that first emerged in China in December 2019. The unprecedented outbreak of SARS-CoV-2 devastated human health within a short time leading to a global public health emergency. A detailed understanding of the viral proteins including their structural characteristics and virulence mechanism on human health is very crucial for developing vaccines and therapeutics. To date, over 1800 structures of non-structural, structural, and accessory proteins of SARS-CoV-2 are determined by cryo-electron microscopy, X-ray crystallography, and NMR spectroscopy. Designing therapeutics to target the viral proteins has several benefits since they could be highly specific against the virus while maintaining minimal detrimental effects on humans. However, for ongoing and future research on SARS-CoV-2, summarizing all the viral proteins and their detailed structural information is crucial. In this review, we compile comprehensive information on viral structural, non-structural, and accessory proteins structures with their binding and catalytic sites, different domain and motifs, and potential drug target sites to assist chemists, biologists, and clinicians finding necessary details for fundamental and therapeutic research.
引用
收藏
页数:24
相关论文
共 50 条
  • [1] Crystallography of SARS-CoV-2 Non-structural Proteins
    Joachimiak, A.
    Chang, C.
    Endres, M.
    Jedrzejczak, R.
    Kim, Y.
    Maltseva, N.
    Michalska, K.
    Osipiuk, J.
    Stols, L.
    Tan, K.
    Tesar, C.
    Wilamowski, M.
    ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2020, 76 : A217 - A217
  • [2] Targeting SARS-CoV-2 Non-Structural Proteins
    Tam, Donald
    Lorenzo-Leal, Ana C.
    Hernandez, Luis Ricardo
    Bach, Horacio
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2023, 24 (16)
  • [3] Antibody landscape against SARS-CoV-2 reveals significant differences between non-structural/accessory and structural proteins
    Li, Yang
    Xu, Zhaowei
    Lei, Qing
    Lai, Dan-yun
    Hou, Hongyan
    Jiang, He-wei
    Zheng, Yun-xiao
    Wang, Xue-ning
    Wu, Jiaoxiang
    Ma, Ming-liang
    Zhang, Bo
    Chen, Hong
    Yu, Caizheng
    Xue, Jun-biao
    Zhang, Hai-nan
    Qi, Huan
    Guo, Shu-juan
    Zhang, Yandi
    Lin, Xiaosong
    Yao, Zongjie
    Sheng, Huiming
    Sun, Ziyong
    Wang, Feng
    Fan, Xionglin
    Tao, Sheng-ce
    CELL REPORTS, 2021, 36 (02):
  • [4] SARS-CoV-2: analysis of the effects of mutations in non-structural proteins
    Senthilazhagan, Kavya
    Sakthimani, Seshagiri
    Kallanja, Deepthi
    Venkataraman, Sangita
    ARCHIVES OF VIROLOGY, 2023, 168 (07)
  • [5] SARS-CoV-2: analysis of the effects of mutations in non-structural proteins
    Kavya Senthilazhagan
    Seshagiri Sakthimani
    Deepthi Kallanja
    Sangita Venkataraman
    Archives of Virology, 2023, 168
  • [6] Antivirals virtual screening to SARS-CoV-2 non-structural proteins
    Nunes, Vinicius S.
    Paschoal, Diego F. S.
    Antonio, Luiz S. Costa
    Dos Santos, Helio F.
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2022, 40 (19): : 8989 - 9003
  • [7] Structural biology of SARS-CoV-2 accessory proteins
    Briggs, David C.
    Kandler, Luise
    Schmidt, Lisa
    Santoni, Gianluca
    Thorn, Andrea
    CRYSTALLOGRAPHY REVIEWS, 2023, 29 (01) : 3 - 18
  • [8] Analysis of non-structural proteins, NSPs of SARS-CoV-2 as targets for computational drug designing
    Raj, Resal
    BIOCHEMISTRY AND BIOPHYSICS REPORTS, 2021, 25
  • [9] Reviews on the structural and non-structural proteins of SARS-CoV-2, and anharmonic description of atomic vibrations
    Bombicz, Petra
    CRYSTALLOGRAPHY REVIEWS, 2023, 29 (03) : 107 - 110
  • [10] SARS-CoV-2 Non-Structural Proteins and Their Roles in Host Immune Evasion
    Low, Zheng Yao
    Zabidi, Nur Zawanah
    Yip, Ashley Jia Wen
    Puniyamurti, Ashwini
    Chow, Vincent T. K.
    Lal, Sunil K.
    VIRUSES-BASEL, 2022, 14 (09):