PlantPAD: a platform for large-scale image phenomics analysis of disease in plant science

被引:5
|
作者
Dong, Xinyu [1 ]
Zhao, Kejun [1 ]
Wang, Qi [1 ,4 ,5 ]
Wu, Xingcai [1 ]
Huang, Yuanqin [2 ,3 ]
Wu, Xue [2 ,3 ]
Zhang, Tianhan [1 ]
Dong, Yawen [2 ,3 ]
Gao, Yangyang [2 ,3 ]
Chen, Panfeng [1 ]
Liu, Yingwei [2 ,3 ]
Chen, Dongyu [2 ,3 ]
Wang, Shuang [2 ,3 ]
Yang, Xiaoyan [2 ,3 ]
Yang, Jing [1 ]
Wang, Yong [6 ]
Gao, Zhenran [7 ]
Wu, Xian [2 ,3 ]
Bai, Qingrong [2 ,3 ]
Li, Shaobo [1 ]
Hao, Gefei [1 ,2 ,3 ]
机构
[1] Guizhou Univ, Coll Comp Sci & Technol, State Key Lab Publ Big Data, Guiyang 550025, Peoples R China
[2] Guizhou Univ, Minist Educ, Ctr Res & Dev Fine Chem, Key Lab Green Pesticide & Agr Bioengn,Natl Key Lab, Guiyang 550025, Peoples R China
[3] Guizhou Univ, Ctr Res & Dev Fine Chem, Guiyang 550025, Peoples R China
[4] Tsinghua Univ, Dept Comp Sci & Technol, Beijing 100084, Peoples R China
[5] Guizhou Univ, Natl Educ Minist, Text Comp & Cognit Intelligence Engn Res Ctr, Guiyang 550025, Peoples R China
[6] Guizhou Univ, Agr Coll, Dept Plant Pathol, Guiyang 550025, Guizhou, Peoples R China
[7] Guizhou Univ, New Rural Dev Res Inst, Guiyang 550025, Guizhou, Peoples R China
基金
中国国家自然科学基金;
关键词
D O I
10.1093/nar/gkad917
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Plant disease, a huge burden, can cause yield loss of up to 100% and thus reduce food security. Actually, smart diagnosing diseases with plant phenomics is crucial for recovering the most yield loss, which usually requires sufficient image information. Hence, phenomics is being pursued as an independent discipline to enable the development of high-throughput phenotyping for plant disease. However, we often face challenges in sharing large-scale image data due to incompatibilities in formats and descriptions provided by different communities, limiting multidisciplinary research exploration. To this end, we build a Plant Phenomics Analysis of Disease (PlantPAD) platform with large-scale information on disease. Our platform contains 421 314 images, 63 crops and 310 diseases. Compared to other databases, PlantPAD has extensive, well-annotated image data and in-depth disease information, and offers pre-trained deep-learning models for accurate plant disease diagnosis. PlantPAD supports various valuable applications across multiple disciplines, including intelligent disease diagnosis, disease education and efficient disease detection and control. Through three applications of PlantPAD, we show the easy-to-use and convenient functions. PlantPAD is mainly oriented towards biologists, computer scientists, plant pathologists, farm managers and pesticide scientists, which may easily explore multidisciplinary research to fight against plant diseases. PlantPAD is freely available at http://plantpad.samlab.cn. Graphical Abstract
引用
收藏
页码:D1556 / D1568
页数:13
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