Molecular Detection and Identification of Plant-Associated Lactiplantibacillus plantarum

被引:5
|
作者
Skotniczny, Magdalena [1 ]
Satora, Pawel [1 ]
机构
[1] Agr Univ Krakow, Fac Food Technol, Dept Fermentat Technol & Microbiol, Balicka 122, PL-30149 Krakow, Poland
关键词
16S rRNA; housekeeping genes; genotyping; WGS; qPCR; shotgun; LACTIC-ACID BACTERIA; LACTOBACILLUS-PLANTARUM; GASTROINTESTINAL-TRACT; MICROBIAL DIVERSITY; SPECIES-DIVERSITY; GENETIC DIVERSITY; QUANTITATIVE PCR; RAPID DETECTION; STRAINS; OPTIMIZATION;
D O I
10.3390/ijms24054853
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Lactiplantibacillus plantarum is a lactic acid bacterium often isolated from a wide variety of niches. Its ubiquity can be explained by a large, flexible genome that helps it adapt to different habitats. The consequence of this is great strain diversity, which may make their identification difficult. Accordingly, this review provides an overview of molecular techniques, both culture-dependent, and culture-independent, currently used to detect and identify L. plantarum. Some of the techniques described can also be applied to the analysis of other lactic acid bacteria.
引用
收藏
页数:14
相关论文
共 50 条
  • [1] Strain diversity of plant-associated Lactiplantibacillus plantarum
    Yu, Annabelle O.
    Goldman, Elissa A.
    Brooks, Jason T.
    Golomb, Benjamin L.
    Yim, Irene S.
    Gotcheva, Velitchka
    Angelov, Angel
    Kim, Eun Bae
    Marco, Maria L.
    [J]. MICROBIAL BIOTECHNOLOGY, 2021, 14 (05): : 1990 - 2008
  • [2] Identification of plant-associated enterococci
    Müller, T
    Ulrich, A
    Ott, EM
    Müller, M
    [J]. JOURNAL OF APPLIED MICROBIOLOGY, 2001, 91 (02) : 268 - 278
  • [3] Detection and isolation of plant-associated bacteria scavenging atmospheric molecular hydrogen
    Kanno, Manabu
    Constant, Philippe
    Tamaki, Hideyuki
    Kamagata, Yoichi
    [J]. ENVIRONMENTAL MICROBIOLOGY, 2016, 18 (08) : 2495 - 2506
  • [4] Cupriavidus plantarum sp. nov., a plant-associated species
    Paulina Estrada-de los Santos
    Roosivelt Solano-Rodríguez
    Lucía Tomiko Matsumura-Paz
    María Soledad Vásquez-Murrieta
    Lourdes Martínez-Aguilar
    [J]. Archives of Microbiology, 2014, 196 : 811 - 817
  • [5] Cupriavidus plantarum sp. nov., a plant-associated species
    Estrada-de los Santos, Paulina
    Solano-Rodriguez, Roosivelt
    Tomiko Matsumura-Paz, Lucia
    Soledad Vasquez-Murrieta, Maria
    Martinez-Aguilar, Lourdes
    [J]. ARCHIVES OF MICROBIOLOGY, 2014, 196 (11) : 811 - 817
  • [6] Plant-Associated Biofilms
    María Antonia Molina
    Juan-Luis Ramos
    Manuel Espinosa-Urgel
    [J]. Reviews in Environmental Science and Biotechnology, 2003, 2 (2-4) : 99 - 108
  • [7] Plant-Associated Dermatitis
    Iyer, Karthik
    Rengifo-Pardo, Monica
    Ehrlich, Alison
    [J]. JOURNAL OF THE DERMATOLOGY NURSES ASSOCIATION, 2015, 7 (05) : 266 - 270
  • [8] Plant-Associated Pseudomonads
    Rivilla, Rafael
    Malone, Jacob G.
    [J]. MICROORGANISMS, 2023, 11 (05)
  • [9] PCR fingerprinting for identification and discrimination of plant-associated facultative methylobacteria
    Raja, P.
    Balachandar, D.
    Sundaram, S. P.
    [J]. INDIAN JOURNAL OF BIOTECHNOLOGY, 2008, 7 (04): : 508 - 514
  • [10] Species Identification in Plant-Associated Prokaryotes and Fungi Using DNA
    Inderbitzin, Patrik
    Robbertse, Barbara
    Schoch, Conrad L.
    [J]. PHYTOBIOMES JOURNAL, 2020, 4 (02): : 103 - 114