In this paper, an optimal method to handle cyclic and acyclic data relations in the linear recursive queries is proposed. High efficiency is achieved by integrating graph traversal mechanisms into a top-down evaluation. In such a way the subsumption checks and the identification of cyclic data can be done very efficielltly First, based on the subsumption checks, the search space can be reduced drastically by avoiding any redundant expansion operation. In fact, in the case of non-cyclic data, the proposed algorithm requires only linear time for evaluating a linear recursive query. On the other hand, in the case of cyclic data, by using the technique for isolating strongly connected components a lot of answers can be generated directly in terms of the intermediate results and the relevant path information instead of evaluating them by performing algebraic operations. Since the cost of generating an answer is much less than that of evaluating an answer by algebraic operations, the time consumption for cyclic data can be reduced by an order of magnitude or more.
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Stanford Univ, Dept Chem, Stanford, CA 94305 USA
Stanford Univ, Sarafan ChEM H, Stanford, CA 94305 USAStanford Univ, Dept Chem, Stanford, CA 94305 USA
Roberts, David S.
Loo, Joseph A.
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Univ Calif Los Angeles, Dept Chem & Biochem, Dept Biol Chem, Los Angeles, CA USAStanford Univ, Dept Chem, Stanford, CA 94305 USA
Loo, Joseph A.
Tsybin, Yury O.
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Spectroswiss, Lausanne, SwitzerlandStanford Univ, Dept Chem, Stanford, CA 94305 USA
Tsybin, Yury O.
Liu, Xiaowen
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Tulane Univ, Sch Med, Deming Dept Med, New Orleans, LA USAStanford Univ, Dept Chem, Stanford, CA 94305 USA
Liu, Xiaowen
Wu, Si
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Univ Alabama, Dept Chem & Biochem, Tuscaloosa, AL USAStanford Univ, Dept Chem, Stanford, CA 94305 USA
Wu, Si
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Chamot-Rooke, Julia
Agar, Jeffrey N.
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Northeastern Univ, Dept Chem & Chem Biol & Pharmaceut Sci, Boston, MA USAStanford Univ, Dept Chem, Stanford, CA 94305 USA
Agar, Jeffrey N.
Pasa-Tolic, Ljiljana
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Pacific Northwest Natl Lab, Environm & Mol Sci Div, Richland, WA USAStanford Univ, Dept Chem, Stanford, CA 94305 USA
Pasa-Tolic, Ljiljana
Smith, Lloyd M.
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Univ Wisconsin, Dept Chem, Madison, WI 53706 USAStanford Univ, Dept Chem, Stanford, CA 94305 USA
Smith, Lloyd M.
Ge, Ying
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Univ Wisconsin, Dept Chem, Madison, WI 53706 USA
Univ Wisconsin Madison, Dept Cell & Regenerat Biol, Human Prote Program, Madison, WI 53706 USAStanford Univ, Dept Chem, Stanford, CA 94305 USA
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Boston Univ, Div Mat Sci & Engn, Boston, MA 02215 USA
Boston Univ, Dept Phys, Boston, MA 02215 USA
Boston Univ, Dept Elect & Comp Engn, Boston, MA 02215 USABoston Univ, Div Mat Sci & Engn, Boston, MA 02215 USA
Imboden, Matthias
Bishop, David
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Boston Univ, Div Mat Sci & Engn, Boston, MA 02215 USA
Boston Univ, Dept Phys, Boston, MA 02215 USA
Boston Univ, Dept Elect & Comp Engn, Boston, MA 02215 USABoston Univ, Div Mat Sci & Engn, Boston, MA 02215 USA