Distances Between Phylogenetic Trees: A Survey

被引：0

作者：

Feng Shi ^{[1
]}

Qilong Feng ^{[1
]}

Jianer Chen ^{[1
,2
]}

Lusheng Wang ^{[3
]}

Jianxin Wang ^{[1
]}

机构：

[1] School of Information Science and Engineering, Central South University

[2] Department of Computer Science and Engineering, Texas A&M University, College Station

[3] Department of Computer Science, City University of Hong Kong

来源：

TsinghuaScienceandTechnology | 2013年 / 18卷 / 05期

基金：

中国国家自然科学基金;

关键词：

phylogenetic tree; tree bisection and reconnection; subtree prune and regraft; fixed-parameter algorithm; approximation algorithm;

D O I：

暂无

中图分类号：

Q75 [分子遗传学]; TP301.6 [算法理论];

学科分类号：

071007 ; 081202 ;

摘要：

Phylogenetic trees have been widely used in the study of evolutionary biology for representing the tree-like evolution of a collection of species. However, different data sets and different methods often lead to the construction of different phylogenetic trees for the same set of species. Therefore, comparing these trees to determine similarities or, equivalently, dissimilarities, becomes the fundamental issue. Typically, Tree Bisection and Reconnection(TBR)and Subtree Prune and Regraft(SPR) distances have been proposed to facilitate the comparison between different phylogenetic trees. In this paper, we give a survey on the aspects of computational complexity, fixed-parameter algorithms, and approximation algorithms for computing the TBR and SPR distances of phylogenetic trees.

引用

页码：490 / 499

页数：10

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