Genetic diversity and phylogenetic tree of Butis genus in the Vietnamese Mekong Delta based on mitochondrial cytochrome b gene sequences

被引:0
|
作者
Lam, Tran Thi Huyen [1 ]
Dinh, Quang Minh [2 ]
Nguyen, Ton Huu Duc [2 ]
Phan, Gieo Hoang [3 ]
机构
[1] Cuu Long Univ, Phu Quoi Ward, Inst High Qual Biotechnol Food Technol, Phu Quoi Ward, Vinh Long 890000, Vietnam
[2] Can Tho Univ, Sch Educ, Dept Biol, Xuan Khanh Ward, Can Tho 900000, Vietnam
[3] Kien Giang Univ, Fac Agr & Rural Dev, Kien Giang 920000, Vietnam
关键词
Genetic distances; Mitochondrial cytochrome b gene; Phylogeny; Mekong Delta; DNA BARCODES; EVOLUTION; TELEOSTEI; PERCIFORMES; GOBIIDAE; FISH; PHYLOGEOGRAPHY; MODEL;
D O I
10.1016/j.ejar.2024.07.006
中图分类号
Q17 [水生生物学];
学科分类号
071004 ;
摘要
The genus Butis comprises fishes with relatively small body size and wide salinity tolerance allowing them to adapt to various environments. This research aims to analyze their phylogenetic relationships through the mitochondrial cytochrome b gene (Cyt b) sequencing. The results revealed that the population of Butis species had nine haplotypes with a haplotype diversity index of 0.67-1.00. The Cyt b gene sequences were rich in %C (30-31%) and low in %G (14-16 %). %AT was always higher than %GC while the AT/GC ratio was constant between Cyt b sequences. The intraspecific genetic distances were 0.001-0.004; meanwhile, the interspecific genetic distances were 0.003-0.203. All B. koilomatodon were in clade I of the phylogeny with a bootstrap value of 69%. Butis humeralis and B. butis were not grouped by species as B. koilomatodon but interspersed in the subclades of clade II with bootstrap values as high as 100%. Simultaneous use of mitochondrial DNA and nuclear DNA barcoding is recommended to conduct more precise identification of B. humeralis and B. butis in future research due to their great similarity in morphology and Cyt b gene sequences.
引用
收藏
页码:498 / 505
页数:8
相关论文
共 50 条
  • [1] Phylogenics of the genus Glossogobius in the Mekong Delta based on the mitochondrial cytochrome b (cytb) gene
    Phan, Gieo Hoang
    Lam, Tran Thi Huyen
    Dinh, Quang Minh
    Nguyen, Ton Huu Duc
    HELIYON, 2023, 9 (05)
  • [2] Phylogenetic studies in Indian scleractinian corals based on mitochondrial cytochrome b gene sequences
    Kumar, S. Senthil
    Gaur, Ajay
    Shivaji, S.
    CURRENT SCIENCE, 2011, 101 (05): : 669 - 676
  • [3] Phylogenetic relationships of the Wrentit based on mitochondrial cytochrome b sequences
    Barhoum, DN
    Burns, KJ
    CONDOR, 2002, 104 (04): : 740 - 749
  • [4] Reassessment of phylogenetic relationships among Pitviper genera based on mitochondrial cytochrome b gene sequences
    Cullings, KW
    Morafka, DJ
    Hernandez, J
    Roberts, JW
    COPEIA, 1997, (02) : 429 - 432
  • [5] Genetic diversity of mitochondrial cytochrome b gene in swamp buffalo
    Sun, T.
    Wang, S.
    Hanif, Q.
    Chen, N.
    Chen, H.
    Lei, C.
    ANIMAL GENETICS, 2020, 51 (06) : 977 - 981
  • [6] Phylogenetic relationships of peccaries based on mitochondrial cytochrome B DNA sequences
    Theimer, TC
    Keim, P
    JOURNAL OF MAMMALOGY, 1998, 79 (02) : 566 - 572
  • [7] Insights into the Turkish and Iranian badgers (the genus Meles) based on the mitochondrial cytochrome b gene sequences
    Ibis, Osman
    Tez, Coskun
    Ozcan, Servet
    Yorulmaz, Tarkan
    Kaya, Alaettin
    Mohradi, Mohammad
    VERTEBRATE ZOOLOGY, 2015, 65 (03) : 399 - 407
  • [8] Phylogenetic relationships in some species of the genus Macrobrachium based on nucleotide sequences of the mitochondrial gene cytochrome oxidase I
    Pereira, G
    De Stefano, H
    Staton, J
    Farrell, B
    MODERN APPROACHES TO THE STUDY OF CRUSTACEA, 2002, : 319 - 322
  • [9] Phylogenetic position of the cryopelagic codfish genus Arctogadus Drjagin, 1932 based on partial mitochondrial cytochrome b sequences
    Peter R. Møller
    Anders D. Jordan
    Peter Gravlund
    John F. Steffensen
    Polar Biology, 2002, 25 : 342 - 349
  • [10] Phylogenetic position of the cryopelagic codfish genus Arctogadus Drjagin, 1932 based on partial mitochondrial cytochrome b sequences
    Moller, PR
    Jordan, AD
    Gravlund, P
    Steffensen, JF
    POLAR BIOLOGY, 2002, 25 (05) : 342 - 349