Big data and single-cell sequencing in acute myeloid leukemia research

被引:2
|
作者
Zou, Yuxuan [1 ]
Zhang, Huiyuan [1 ]
Hu, Hongbo [1 ,2 ]
机构
[1] Sichuan Univ, West China Hosp, Ctr Hematol & Immunol, Canc Ctr,State Key Lab Biotherapy, Chengdu 610041, Peoples R China
[2] Chongqing Int Inst Immunol, Chongqing, Peoples R China
来源
MEDCOMM-ONCOLOGY | 2023年 / 2卷 / 03期
基金
中国国家自然科学基金;
关键词
acute myeloid leukemia; big data; heterogeneity; precise medicine; single-cell sequencing; NUCLEUS RNA-SEQ; PROGNOSTIC-SIGNIFICANCE; GENETIC-HETEROGENEITY; MUTATIONS; DNA; AMPLIFICATION; CHEMOTHERAPY; EVOLUTION; CANCER; TRANSCRIPTOME;
D O I
10.1002/mog2.47
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
The advancement of diverse technologies has led to a substantial increase in valuable biomedical data, particularly in the field of acute myeloid leukemia (AML). Effective utilization of this wealth of data is crucial for attaining a comprehensive and in-depth understanding of AML, thereby facilitating optimal diagnosis, treatment, and prognosis. Among the various approaches to data acquisition, single-cell sequencing has emerged as an impressive tool. The developments of single-cell sequencing methods have empowered researchers to analyze the genome, transcriptome, proteome, and epigenome data at the single-cell level. It also offers a means to uncover fine information, providing unique prognostic insights and aiding in the identification of therapeutic targets. Furthermore, it enhances our understanding of AML heterogeneity, clonal evolution, and resistance mechanisms, ultimately leading to the development of better treatment strategies. In this review, we present an overview of AML as well as single-cell sequencing technologies, then explore their potential contributions to AML research in different aspects, and provide some information about resources and data processing. Utilizing numerous amounts of different kinds of data from various sources can contribute to further understanding of acute myelogenous leukemia, playing a positive role in different aspects of research and applications to benefit patients, and the discoveries in different fields can even interact to provide one-way or mutual promotion as well. Among various data sources, single-cell sequencing is an emerging option that is powerful and impressive. image
引用
收藏
页数:21
相关论文
共 50 条
  • [21] MPO and Trh within Leukemia Stem Cells Increased Chemosensitivity in Acute Myeloid Leukemia: A Single-Cell RNA Sequencing Approach
    Teng, Chieh-Lin Jerry
    Chen, Chung-Hsing
    Hsiao, Tzu-Hung
    Wu, Ting-Shuan
    Liao, Yu-Min
    BLOOD, 2023, 142
  • [22] Longitudinal single-cell profiling of chemotherapy response in acute myeloid leukemia
    Naldini, Matteo Maria
    Casirati, Gabriele
    Barcella, Matteo
    Rancoita, Paola Maria Vittoria
    Cosentino, Andrea
    Caserta, Carolina
    Pavesi, Francesca
    Zonari, Erika
    Desantis, Giacomo
    Gilioli, Diego
    Carrabba, Matteo Giovanni
    Vago, Luca
    Bernardi, Massimo
    Di Micco, Raffaella
    Di Serio, Clelia
    Merelli, Ivan
    Volpin, Monica
    Montini, Eugenio
    Ciceri, Fabio
    Gentner, Bernhard
    NATURE COMMUNICATIONS, 2023, 14 (01)
  • [23] Single-Cell Atlas of Driver Mutations in Acute Myeloid Leukemia (AML)
    Morita, Kiyomi
    Wang, Feng
    Durruthy-Durruthy, Robert
    Parikh, Anup
    Matthews, Jairo
    Little, Latasha
    Tippen, Samantha
    Gumbs, Curtis
    Zhang, Jianhua
    Song, Xingzhi
    Thompson, Erika
    Patel, Keyur
    Bueso-Ramos, Carlos E.
    DiNardo, Courtney D.
    Ravandi, Farhad
    Jabbour, Elias J.
    Andreeff, Michael
    Cortes, Jorge E.
    Konopleva, Marina Y.
    Garcia-Manero, Guillermo
    Kantarjian, Hagop M.
    Eastburn, Dennis J.
    Futreal, P. Andrew
    Takahashi, Koichi
    BLOOD, 2018, 132
  • [24] Prognostic characteristics of immune subtypes associated with acute myeloid leukemia and their identification in cell subsets based on single-cell sequencing analysis
    Lu, Jie
    Zheng, Guowei
    Dong, Ani
    Chang, Xinyu
    Cao, Xiting
    Liu, Mengying
    Shi, Xuezhong
    Wang, Chunmei
    Yang, Yongli
    Jia, Xiaocan
    FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, 2022, 10
  • [25] Single-cell sequencing in cancer research
    Prado, Mireia Mato
    Frampton, Adam E.
    Stebbing, Justin
    Krell, Jonathan
    EXPERT REVIEW OF MOLECULAR DIAGNOSTICS, 2016, 16 (01) : 1 - 5
  • [26] Single-cell immune landscape of measurable residual disease in acute myeloid leukemia
    Mo, Xiaodong
    Zhang, Weilong
    Fu, Guomei
    Chang, Yingjun
    Zhang, Xiaohui
    Xu, Lanping
    Wang, Yu
    Yan, Chenhua
    Shen, Mengzhu
    Wei, Qiuxia
    Yan, Changjian
    Huang, Xiaojun
    SCIENCE CHINA-LIFE SCIENCES, 2024, 67 (11) : 2309 - 2322
  • [27] Single-cell landscape of innate and acquired drug resistance in acute myeloid leukemia
    Rebekka Wegmann
    Ximena Bonilla
    Ruben Casanova
    Stéphane Chevrier
    Ricardo Coelho
    Cinzia Esposito
    Joanna Ficek-Pascual
    Sandra Goetze
    Gabriele Gut
    Francis Jacob
    Andrea Jacobs
    Jack Kuipers
    Ulrike Lischetti
    Julien Mena
    Emanuela S. Milani
    Michael Prummer
    Jacobo Sarabia Del Castillo
    Franziska Singer
    Sujana Sivapatham
    Nora C. Toussaint
    Oliver Vilinovszki
    Mattheus H. E. Wildschut
    Tharshika Thavayogarajah
    Disha Malani
    Rudolf Aebersold
    Marina Bacac
    Niko Beerenwinkel
    Christian Beisel
    Bernd Bodenmiller
    Viola Heinzelmann-Schwarz
    Viktor H. Koelzer
    Mitchell P. Levesque
    Holger Moch
    Lucas Pelkmans
    Gunnar Rätsch
    Markus Tolnay
    Andreas Wicki
    Bernd Wollscheid
    Markus G. Manz
    Berend Snijder
    Alexandre P. A. Theocharides
    Nature Communications, 15 (1)
  • [28] Discrete single-cell microRNA analysis for phenotyping the heterogeneity of acute myeloid leukemia
    Zhao, Xi
    Wang, Zixun
    Ji, Xianglin
    Bu, Shuyu
    Fang, Peilin
    Wang, Yuan
    Wang, Mingxue
    Yang, Yang
    Zhang, Wenjun
    Leung, Anskar Y. H.
    Shi, Peng
    BIOMATERIALS, 2022, 291
  • [29] Identification of single-cell blasts in pediatric acute myeloid leukemia using an autoencoder
    Driessen, Alice
    Unger, Susanne
    Nguyen, An-phi
    Ries, Rhonda E.
    Meshinchi, Soheil
    Kreutmair, Stefanie
    Alberti, Chiara
    Sumazin, Pavel
    Aplenc, Richard
    Redell, Michele S.
    Becher, Burkhard
    Martinez, Maria Rodriguez
    LIFE SCIENCE ALLIANCE, 2024, 7 (11)
  • [30] Single-cell genotyping demonstrates complex clonal diversity in acute myeloid leukemia
    Paguirigan, Amy L.
    Smith, Jordan
    Meshinchi, Soheil
    Carroll, Martin
    Maley, Carlo
    Radich, Jerald P.
    SCIENCE TRANSLATIONAL MEDICINE, 2015, 7 (281)