Improved Gene Detection from Low-Input FFPE Samples Using Total RNA Sequencing

被引:0
|
作者
Pavlica, J. [1 ]
Haimes, J. [1 ]
Giorda, K. [1 ]
Gelagay, D. [1 ]
Sanders, T. [1 ]
Garnett, A. [1 ]
Hanek, A. [1 ]
Marshall, C. [1 ]
Reed, K. [1 ]
Harrison, T. [1 ]
Kudlow, B. [1 ]
机构
[1] Watchmaker Genom, Boulder, CO USA
来源
JOURNAL OF MOLECULAR DIAGNOSTICS | 2024年 / 26卷 / 11期
关键词
D O I
暂无
中图分类号
R36 [病理学];
学科分类号
100104 ;
摘要
ST115
引用
收藏
页码:S128 / S128
页数:1
相关论文
共 50 条
  • [31] Robust transcriptional signatures for low-input RNA samples based on relative expression orderings
    Huaping Liu
    Yawei Li
    Jun He
    Qingzhou Guan
    Rou Chen
    Haidan Yan
    Weicheng Zheng
    Kai Song
    Hao Cai
    You Guo
    Xianlong Wang
    Zheng Guo
    BMC Genomics, 18
  • [32] An Improved Method for RNA Extraction from FFPE Tissue Samples Yields Less Degraded RNA for Gene Expression Analysis
    Chen, P.
    Qin, J.
    Myeres, S.
    Sanada, C.
    Yassa, N.
    Sailey, C.
    McLean, L.
    Ramakrishnan, R.
    JOURNAL OF MOLECULAR DIAGNOSTICS, 2017, 19 (06): : 1053 - 1054
  • [33] NanoPARE: parallel analysis of RNA 5′ ends from low-input RNA
    Schon, Michael A.
    Kellner, Max J.
    Plotnikova, Alexandra
    Hofmann, Falko
    Nodine, Michael D.
    GENOME RESEARCH, 2018, 28 (12) : 1931 - 1942
  • [34] Robust transcriptional signatures for low-input RNA samples based on relative expression orderings
    Liu, Huaping
    Li, Yawei
    He, Jun
    Guan, Qingzhou
    Chen, Rou
    Yan, Haidan
    Zheng, Weicheng
    Song, Kai
    Cai, Hao
    Guo, You
    Wang, Xianlong
    Guo, Zheng
    BMC GENOMICS, 2017, 18
  • [35] A comparative analysis of library preparation technologies for RNA sequencing from FFPE samples
    Pavlica, Jennifer
    Sanders, Travis
    Gelagay, David
    Reed, Kailee
    Harrison, Thomas
    Corbet, Giulia
    Haimes, Josh
    Hanek, Ariele
    Giorda, Kristina
    Kudlow, Brian
    CANCER RESEARCH, 2024, 84 (06)
  • [36] Purification of Quality RNA from FFPE Tissue Using the ReliaPrep™ FFPE Total RNA Miniprep System
    Nassif, Nadine
    Hendricksen, Amy
    BIOTECHNIQUES, 2012, 52 (03) : 204 - 205
  • [37] An evaluation of NGS to identify gene fusions using RNA from FFPE solid tumor samples
    Parks, Julianne Tdr
    Byron, Luo
    Crain, Brian
    June, Snedecor
    Chen, Zhao
    Du, Tingting
    Sica, Gabriel L.
    Owonikoko, Taofee K.
    Neill, Stewart G.
    Newman, Scott
    Saxe, Debra F.
    LoCoco, Jennifer S.
    Chuang, Han-Yu
    Lin, Charles
    Stephens, Kathryn M.
    Rossi, Michael R.
    Friedenberg, Matthew C.
    CANCER RESEARCH, 2016, 76
  • [38] Analyzing immunotherapy resistance in microsatellite instable colorectal FFPE samples using RNA sequencing
    Oswalt, Cameron
    Moyer, Ashley
    Nguyen, Y-Van
    Hanks, Brent
    Strickler, John
    Hsu, David
    Jeck, William
    DeVito, Nicholas
    CANCER IMMUNOLOGY RESEARCH, 2025, 13 (02)
  • [39] Improved Gene Fusion Detection in Childhood Cancer Diagnostics Using RNA Sequencing
    Hehir-Kwa, Jayne Y.
    Koudijs, Marco J.
    Verwiel, Eugene T. P.
    Kester, Lennart A.
    van Tuil, Marc
    Strengman, Eric
    Buijs, Arjan
    Kranendonk, Mariette E. G.
    Hiemcke-Jiwa, Laura S.
    de Haas, Valerie
    van de Geer, Ellen
    de Leng, Wendy
    van der Lugt, Jasper
    Lijnzaad, Philip
    Holstege, Frank C. P.
    Kemmeren, Patrick
    Tops, Bastiaan B. J.
    JCO PRECISION ONCOLOGY, 2022, 6
  • [40] EXTRACTING HIGH QUALITY RNA FROM FFPE SAMPLES FOR GENE EXPRESSION STUDIES
    Weiss, J.
    Do, H.
    Wright, G.
    Russell, P.
    Dobrovic, A.
    JOURNAL OF THORACIC ONCOLOGY, 2012, 7 (09) : S187 - S187