Protocol for establishing CRISPR-Cas12a for efficient genome editing of Pseudomonas aeruginosa phages

被引:0
|
作者
Yan, Bingjie [1 ,2 ]
Liu, Yujia [2 ]
Cai, Yumei [1 ,2 ]
Liu, Yuqing [1 ,2 ,3 ,4 ]
Chen, Yibao [1 ,3 ,4 ]
机构
[1] Shandong Acad Agr Sci, Inst Anim Sci & Vet Med, Shandong Key Lab Anim Dis Control & Breeding, Jinan, Peoples R China
[2] Shandong Agr Univ, Coll Vet Med, Tai An, Peoples R China
[3] China UK Joint Lab Bacteriophage Engn, Jinan, Peoples R China
[4] Shandong Vamph Anim Hlth Prod Co LTD, Jinan, Peoples R China
来源
STAR PROTOCOLS | 2024年 / 5卷 / 04期
基金
中国国家自然科学基金;
关键词
D O I
10.1016/j.xpro.2024.103488
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
We developed an efficient type V CRISPR-Cas12a system tailored specifically for Pseudomonas aeruginosa phages, showcasing its remarkable cleavage activity and the ability to precisely introduce genetic modifications, including point mutations, deletions, and insertions, into phage genomes. Here, we present a protocol for establishing CRISPR-Cas12a for genome editing of Pseudomonas aeruginosa phages. We describe steps for the construction of pCRISPR-12a plasmid and guide RNA and the utilization of the type V CRISPR-Cas12a system for precise genetic editing of phages. For complete details on the use and execution of this protocol, please refer to Chen et al.1
引用
收藏
页数:16
相关论文
共 50 条
  • [31] Rapid detection of Pseudomonas aeruginosa by recombinase polymerase amplification combined with CRISPR-Cas12a biosensing system
    Liu, Shuang
    Huang, Siyuan
    Li, Fang
    Sun, Yuanyuan
    Fu, Jin
    Xiao, Fei
    Jia, Nan
    Huang, Xiaolan
    Sun, Chunrong
    Zhou, Juan
    Wang, Yi
    Qu, Dong
    FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY, 2023, 13
  • [32] Efficient genome editing by CRISPR-Mb3Cas12a in mice
    Wang, Zhuqing
    Wang, Yue
    Wang, Shawn
    Gorzalski, Andrew J.
    McSwiggin, Hayden
    Yu, Tian
    Castaneda-Garcia, Kimberly
    Prince, Brian
    Wang, Hetan
    Zheng, Huili
    Yan, Wei
    JOURNAL OF CELL SCIENCE, 2020, 133 (09)
  • [33] Optimization of NLS Architecture to Increase Editing Activity of CRISPR-Cas12a
    Luk, Kevin
    Liu, Pengpeng
    Maitland, Stacy
    Idrizi, Feston
    Leland, Thomas
    Ponnienselvan, Karthikeyan
    Zeng, Jing
    Peters, Michael J.
    Bauer, Daniel E.
    Wolfe, Scot A.
    MOLECULAR THERAPY, 2020, 28 (04) : 459 - 459
  • [34] CRISPR/Cas9-based Genome Editing in Pseudomonas aeruginosa and Cytidine Deaminase-Mediated Base Editing in Pseudomonas Species
    Chen, Weizhong
    Zhang, Ya
    Zhang, Yifei
    Pi, Yishuang
    Gu, Tongnian
    Song, Liqiang
    Wang, Yu
    Ji, Quanjiang
    ISCIENCE, 2018, 6 : 222 - +
  • [35] CRISPR-Cas12a system in fission yeast for multiplex genomic editing and CRISPR interference
    Zhao, Yu
    Boeke, Jef D.
    NUCLEIC ACIDS RESEARCH, 2020, 48 (10) : 5788 - 5798
  • [36] A highly efficient in vivo plasmid editing tool based on CRISPR-Cas12a and phage λ Red recombineering
    Yiman Geng
    Haiqin Yan
    Pei Li
    Gaixian Ren
    Xiaopeng Guo
    Peiqi Yin
    Leiliang Zhang
    Zhaohui Qian
    Zhendong Zhao
    Yi-Cheng Sun
    Journal of Genetics and Genomics, 2019, 46 (09) : 452 - 455
  • [37] Targeted Genome Editing of Virulent Phages Using CRISPR-Cas9
    Lemay, Marie-Laurence
    Renaud, Ariane C.
    Rousseau, Genevieve M.
    Moineau, Sylvain
    BIO-PROTOCOL, 2018, 8 (01):
  • [38] A highly efficient in vivo plasmid editing tool based on CRISPR-Cas12a and phage λ Red recombineering
    Geng, Yiman
    Yan, Haiqin
    Li, Pei
    Ren, Gaixian
    Guo, Xiaopeng
    Yin, Peiqi
    Zhang, Leiliang
    Qian, Zhaohui
    Zhao, Zhendong
    Sun, Yi-Cheng
    JOURNAL OF GENETICS AND GENOMICS, 2019, 46 (09) : 455 - 458
  • [39] An Efficient CRISPR/Cas12e System for Genome Editing in Sinorhizobium meliloti
    Liu, Guangqing
    Wang, Huiying
    Tong, Baisong
    Cui, Yali
    Vonesch, Sibylle C.
    Dong, Huina
    Zhang, Dawei
    ACS SYNTHETIC BIOLOGY, 2023, 12 (03): : 898 - 903
  • [40] Highly specific chimeric DNA-RNA-guided genome editing with enhanced CRISPR-Cas12a system
    Kim, Hanseop
    Lee, Wi-Jae
    Kim, Chan Hyoung
    Oh, Yeounsun
    Gwon, Lee Wha
    Lee, Hyomin
    Song, Woojeung
    Hur, Junho K.
    Lim, Kyung-Seob
    Jeong, Kang Jin
    Nam, Ki-Hoan
    Won, Young-Suk
    Lee, Kyeong-Ryoon
    Lee, Youngjeon
    Kim, Young-Hyun
    Huh, Jae-Won
    Jun, Bong-Hyun
    Lee, Dong-Seok
    Lee, Seung Hwan
    MOLECULAR THERAPY NUCLEIC ACIDS, 2022, 28 : 353 - 362