A Meta-Graph for the Construction of an RNA-Centered Knowledge Graph

被引:1
|
作者
Cavalleri, Emanuele [1 ]
Bonfitto, Sara [1 ]
Cabri, Alberto [1 ]
Gliozzo, Jessica [1 ]
Perlasca, Paolo [1 ]
Soto-Gomez, Mauricio [1 ]
Trucco, Gabriella [1 ]
Casiraghi, Elena [1 ]
Valentini, Giorgio [1 ]
Mesiti, Marco [1 ]
机构
[1] Univ Milan, Dipartimento Informat, AnacletoLab, Via Celoria 18, Milan, Italy
关键词
RNA molecules; RNA data sources; Biological KGs; SUBCELLULAR-LOCALIZATION; INCREASED COVERAGE; DATABASE; REPOSITORY; RESOURCE;
D O I
10.1007/978-3-031-34953-9_13
中图分类号
R318 [生物医学工程];
学科分类号
0831 ;
摘要
technologies for the development of new vaccines. Besides vaccines, a world of RNA-based drugs, including small non-coding RNA, could open new avenues for the development of novel therapies covering the full spectrum of the main human diseases. In the context of the "National Center for Gene Therapy and Drugs based on RNA Technology" funded by the Italian PNRR and the NextGenerationEU program, our lab will contribute to the construction of a Knowledge Graph (KG) for RNA-drug analysis and the development of innovative algorithms to support RNA-drug discovery. In this paper, we describe the initial steps for the identification of public data sources from which information about different kinds of non-coding RNA sequences (and their relationships with other molecules) can be collected and used for feeding the KG. An in-depth analysis of the characteristics of these sources is provided, along with a meta-graph we developed to guide the RNA-KG construction by exploiting and integrating biomedical ontologies and relevant data from public databases.
引用
收藏
页码:165 / 180
页数:16
相关论文
共 50 条
  • [41] Specifying Architecture of Knowledge Graph with Data Graph, Information Graph, Knowledge Graph and Wisdom Graph
    Duan, Yucong
    Shao, Lixu
    Hu, Gongzhu
    Zhou, Zhangbing
    Zou, Quan
    Lin, Zhaoxin
    2017 IEEE/ACIS 15TH INTERNATIONAL CONFERENCE ON SOFTWARE ENGINEERING RESEARCH, MANAGEMENT AND APPLICATIONS (SERA), 2017, : 327 - 332
  • [42] Knowledge Graph Construction for Secondary Equipment Fault Diagnosis Based on Graph Attention
    Mu, Juntao
    Song, Shengcheng
    Ye, Lijuan
    Shi, Yulin
    Zhou, Wei
    Chen, Bin
    Yang, Yongkang
    Proceedings - 2024 International Conference on Artificial Intelligence and Power Systems, AIPS 2024, 2024, : 24 - 27
  • [43] Construction of Cultural Heritage Knowledge Graph Based on Graph Attention Neural Network
    Wang, Yi
    Liu, Jun
    Wang, Weiwei
    Chen, Jian
    Yang, Xiaoyan
    Sang, Lijuan
    Wen, Zhiqiang
    Peng, Qizhao
    APPLIED SCIENCES-BASEL, 2024, 14 (18):
  • [44] Scholar-Course Knowledge Graph Construction Based on Graph Database Storage
    Zheng, Dongyang
    Long, Yongxu
    Zhou, Zekai
    Chen, Wande
    Li, Jianguo
    Tang, Yong
    EMERGING TECHNOLOGIES FOR EDUCATION, SETE 2021, 2021, 13089 : 448 - 459
  • [45] Application of Graph Convolutional Network in the Construction of Knowledge Graph for Higher Mathematics Teaching
    Yuan, Ruixue
    Li, Hongming
    Sun, Zhenyu
    Zhang, Huiwen
    SENSORS AND MATERIALS, 2023, 35 (12) : 4269 - 4290
  • [46] A Comprehensive Survey on Automatic Knowledge Graph Construction
    Zhong, Lingfeng
    Wu, Jia
    Li, Qian
    Peng, Hao
    Wu, Xindong
    ACM COMPUTING SURVEYS, 2024, 56 (04)
  • [47] Knowledge Graph Construction and Search for Biological Databases
    Zaki, Nazar
    Tennakoon, Chandana
    Al Ashwal, Hany
    2017 5TH INTERNATIONAL CONFERENCE ON RESEARCH AND INNOVATION IN INFORMATION SYSTEMS (ICRIIS 2017): SOCIAL TRANSFORMATION THROUGH DATA SCIENCE, 2017,
  • [48] Research on Knowledge Graph Construction of Pesticide Field
    Zhu, Hongmei
    Wang, Lu
    Liang, Yongquan
    Zhang, Guangmei
    Zhang, Jijun
    BASIC & CLINICAL PHARMACOLOGY & TOXICOLOGY, 2020, 126 : 80 - 81
  • [49] Construction of Chinese Pediatric Medical Knowledge Graph
    Song, Yu
    Cai, Linkun
    Zhang, Kunli
    Zan, Hongying
    Liu, Tao
    Ren, Xiaohui
    SEMANTIC TECHNOLOGY, JIST 2019, 2020, 1157 : 213 - 220
  • [50] Earthquake event knowledge graph construction and reasoning
    Qiu, Peiyuan
    Pang, Linke
    Luo, Yong
    Liu, Yaohui
    Xing, Huaqiao
    Liu, Kang
    Zhuang, Guoliang
    GEOMATICS NATURAL HAZARDS & RISK, 2024, 15 (01)