Free Energy Analysis of Protein-DNA Binding: The EcoRI Endonuclease-DNA Complex

被引:0
|
作者
Dept. Chem. Prog. in Molec. Biophys., Wesleyan University, Middletown, CT 06459, United States [1 ]
不详 [2 ]
机构
来源
J. Comput. Phys. | / 1卷 / 333-357期
关键词
Number:; GM-08271; GM-37909; Acronym:; NIH; Sponsor: National Institutes of Health; -; CSIR; Sponsor: Council of Scientific and Industrial Research; India; IFCPAR; Sponsor: Indo-French Centre for the Promotion of Advanced Research;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [31] Free-energy component analysis of 40 protein-DNA complexes: A consensus view on the thermodynamics of binding at the molecular level
    Jayaram, B
    McConnell, K
    Dixit, SB
    Das, A
    Beveridge, DL
    JOURNAL OF COMPUTATIONAL CHEMISTRY, 2002, 23 (01) : 1 - 14
  • [32] Elastic energy of protein-DNA chimeras
    Tseng, Chiao-Yu
    Wang, Andrew
    Zocchi, Giovanni
    Rolih, Biljana
    Levine, Alex J.
    PHYSICAL REVIEW E, 2009, 80 (06):
  • [33] Protein-DNA Binding in the Absence of Consensus Binding Motif
    Afek, Ariel
    Schipper, Joshua L.
    Gordan, Raluca
    Lukatsky, David B.
    BIOPHYSICAL JOURNAL, 2015, 108 (02) : 205A - 205A
  • [34] Mechanosensing of DNA bending in a single specific protein-DNA complex
    Shimin Le
    Hu Chen
    Peiwen Cong
    Jie Lin
    Peter Dröge
    Jie Yan
    Scientific Reports, 3
  • [35] Alchemical Free Energy Calculations for Nucleotide Mutations in Protein-DNA Complexes
    Gapsys, Vytautas
    de Groot, Bert L.
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2017, 13 (12) : 6275 - 6289
  • [36] Mechanosensing of DNA bending in a single specific protein-DNA complex
    Le, Shimin
    Chen, Hu
    Cong, Peiwen
    Lin, Jie
    Droege, Peter
    Yan, Jie
    SCIENTIFIC REPORTS, 2013, 3
  • [37] DNA repair in a protein-DNA complex: searching for the key to get in
    Kwon, Y
    Smerdon, MJ
    MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS, 2005, 577 (1-2) : 118 - 130
  • [38] The interaction of a protein-DNA surface complex with low-energy electrons
    Solomun, T.
    Skalicky, T.
    CHEMICAL PHYSICS LETTERS, 2008, 453 (1-3) : 101 - 104
  • [39] FACILITATED DISTORTION OF THE DNA SITE ENHANCES ECORI ENDONUCLEASE DNA RECOGNITION
    LESSER, DR
    KURPIEWSKI, MR
    WATERS, T
    CONNOLLY, BA
    JENJACOBSON, L
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1993, 90 (16) : 7548 - 7552
  • [40] Protein-DNA binding in high-resolution
    Mahony, Shaun
    Pugh, B. Franklin
    CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY, 2015, 50 (04) : 269 - 283