NGSPE: A pipeline for end-to-end analysis of DNA sequencing data and comparison between different platforms

被引:1
|
作者
Huang, Ke [1 ]
Yellapantula, Venkata [1 ,2 ]
Baier, Leslie [1 ]
Dinu, Valentin [1 ,2 ]
机构
[1] Diabetes Molecular Genetics Section, PECRB, NIDDK, National Institutes of Health, Phoenix, AZ, United States
[2] Department of Biomedical Informatics, Arizona State University, Phoenix, AZ, United States
关键词
D O I
10.1016/j.compbiomed.2013.05.025
中图分类号
学科分类号
摘要
引用
收藏
页码:1171 / 1176
相关论文
共 50 条
  • [31] Comparison of geometrical accuracy of different SRS delivery systems with end-to-end tests
    Stelczer, G.
    Szegedi, D.
    Major, T.
    Polgar, C.
    Pesznyak, C.
    RADIOTHERAPY AND ONCOLOGY, 2019, 133 : S948 - S949
  • [32] Scywalker: scalable end-to-end data analysis workflow for long-read single-cell transcriptome sequencing
    De Rijk, Peter
    Watzeels, Tijs
    Kuecuekali, Fahri
    Van Dongen, Jasper
    Faura, Julia
    Willems, Patrick
    De Deyn, Lara
    Duchateau, Lena
    Grones, Carolin
    Eekhout, Thomas
    De Pooter, Tim
    Joris, Geert
    Rombauts, Stephane
    De Rybel, Bert
    Rademakers, Rosa
    Van Breusegem, Frank
    Strazisar, Mojca
    Sleegers, Kristel
    De Coster, Wouter
    BIOINFORMATICS, 2024, 40 (09)
  • [33] Scalable and Configurable End-to-End Collection and Analysis of IoT Security Data
    Roukounaki, Aikaterini
    Efremidis, Sofoklis
    Soldatos, John
    Neises, Juergen
    Walloschke, Thomas
    Kefalakis, Nikos
    2019 GLOBAL IOT SUMMIT (GIOTS), 2019,
  • [34] TITAN: An end-to-end data analysis environment for the Hyperion™ imaging system
    Thirumal, Sindhura
    Jamzad, Amoon
    Cotechini, Tiziana
    Hindmarch, Charles T.
    Graham, Charles H.
    Siemens, D. Robert
    Mousavi, Parvin
    CYTOMETRY PART A, 2022, 101 (05) : 423 - 433
  • [35] RNASequest: An End-to-End Reproducible RNAseq Data Analysis and Publishing Framework
    Zhu, Jing
    Sun, Yu H.
    Ouyang, Zhengyu
    Li, Kejie
    Negi, Soumya
    Piya, Sarbottam
    Hu, Wenxing
    Zavodszky, Maria I.
    Yalamanchili, Hima
    Chen, Yirui
    Zhang, Xinmin
    Casey, Fergal
    Zhang, Baohong
    JOURNAL OF MOLECULAR BIOLOGY, 2023, 435 (14)
  • [36] End-to-end online performance data capture and analysis for scientific workflows
    Papadimitriou, George
    Wang, Cong
    Vahi, Karan
    da Silva, Rafael Ferreira
    Mandal, Anirban
    Liu, Zhengchun
    Mayani, Rajiv
    Rynge, Mats
    Kiran, Mariam
    Lynch, Vickie E.
    Kettimuthu, Rajkumar
    Deelman, Ewa
    Vetter, Jeffrey S.
    Foster, Ian
    FUTURE GENERATION COMPUTER SYSTEMS-THE INTERNATIONAL JOURNAL OF ESCIENCE, 2021, 117 : 387 - 400
  • [37] End-to-end service data analysis: Efficiencies achieved across the enterprise
    Herger, L. M.
    Rippon, W. J.
    Fonseca, C. A.
    Pointer, W.
    Belgodere, B. M.
    Cornejo, W. H.
    Frissora, M. J.
    IBM JOURNAL OF RESEARCH AND DEVELOPMENT, 2017, 61 (01) : 5 - 16
  • [38] End-to-end online performance data capture and analysis for scientific workflows
    Papadimitriou, George
    Wang, Cong
    Vahi, Karan
    da Silva, Rafael Ferreira
    Mandal, Anirban
    Liu, Zhengchun
    Mayani, Rajiv
    Rynge, Mats
    Kiran, Mariam
    Lynch, Vickie E.
    Kettimuthu, Rajkumar
    Deelman, Ewa
    Vetter, Jeffrey S.
    Foster, Ian
    Future Generation Computer Systems, 2021, 117 : 387 - 400
  • [39] ENACT: End-to-End Analysis of Visium High Definition (HD) Data
    Kamel, Mena
    Song, Yiwen
    Solbas, Ana
    Villordo, Sergio
    Sarangi, Amrut
    Senin, Pavel
    Sunaal, Mathew
    Ayestas, Luis Cano
    Levin, Clement
    Wang, Seqian
    Classe, Marion
    Bar-Joseph, Ziv
    Planas, Albert Pla
    BIOINFORMATICS, 2025, 41 (03)
  • [40] BetaBuddy: An automated end-to-end computer vision pipeline for analysis of calcium fluorescence dynamics in β-cells
    Alsup, Anne M.
    Fowlds, Kelli
    Cho, Michael
    Luber, Jacob M.
    PLOS ONE, 2024, 19 (03):