Computational study of the supramolecular complexation of azocompounds with cucurbit[7]uril: effects on the production and release of free radicals

被引:2
|
作者
Forero-Giron, Angie C. [1 ]
Gutierrez-Oliva, Soledad [2 ]
Lopez-Alarcon, Camilo [1 ]
Herrera, Barbara [2 ]
Aliaga, Margarita E. [1 ]
机构
[1] Pontificia Univ Catolica Chile, Escuela Quim, Fac Quim & Farm, Dept Quim Fis, Av Vicuna Mackenna 4860, Santiago 7820436, Macul, Chile
[2] Pontificia Univ Catolica Chile, Escuela Quim, Fac Quim & Farm, Dept Quim Fis,Lab Quim Teor Computac QTC, Av Vicuna Mackenna 4860, Santiago 7820436, Macul, Chile
关键词
Azocompounds; Cucurbit[7]uril complexes; Supramolecular radical chemistry; Peroxyl radicals; Alkyl radicals; Computational chemistry; DISPERSION; BINDING; DFT;
D O I
10.1007/s00894-024-06132-7
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
ContextAn inclusion complex between 2,2 '-azobis(2-methylpropionamidine) dihydrochloride (AAPH), a widely employed azocompound, and cucurbit[7]util (CB[7]), has shown an increased yield of radicals derived from the homolytic cleavage of the azo bond. Aimed to get insights about the formation of complexes and their effect on the yield of radicals production, complexes of CB[7] with seven azocompounds were studied by computational methods. Molecular electrostatic surfaces and structural analysis showed that the inclusion of symmetrical azocompounds inside of CB[7] depends mainly on the charge density and position of the functional groups at the main chain of the azoderivative. Analysis of non-covalent interactions and thermodynamic outcomes revealed that positively charged azocompounds with amidinium or imidazolium groups presented strong favorable interactions (multiple hydrogen bonds) with the oxygens of CB[7] portals. Additionally, carbon-centered radicals generated from the complexes (azocompounds@CB[7]) were corroborated using the electron localization function (ELF). Results evidenced that the strength of the interactions and the level of inclusion (partial or complete) between the azocompound and CB[7] determined the final orientation of the radicals (located out- or inside of the CB[7] cavity). Obtained results could be employed to design new supramolecular systems based on the properties of azocomplound@CB[7] complexes for new scientific or industrial applications. MethodsFirst-principles calculations at B3LYP-D3BJ/6-311g(d,p) level theory in the gas phase and in solvent (PCM, water) were performed in Gaussian 16 software package. The dispersion energy correction was included through the Grimme's dispersion with Becke-Johnson damping D3(BJ). Thermodynamical data and the minimum character of all structures were obtained from vibrational frequency calculations. NBO, Multiwfn, Chemcraft, and NCIPLOT software were used to perform population analysis, analyze outcomes, visualize data, and display non-covalent interactions respectively.
引用
收藏
页数:13
相关论文
共 50 条
  • [31] Complexation of Eu(III) with Cucurbit[n]uril, n=5 and 7: A Thermodynamic and Structural Study
    Rawat, Neetika
    Kar, Aishwarya
    Bhattacharyya, A.
    Rao, Ankita
    Nayak, S. K.
    Nayak, C.
    Jha, S. N.
    Bhattacharyya, D.
    Tomar, B. S.
    DALTON TRANSACTIONS, 2015, 44 (09) : 4246 - 4258
  • [32] A molecular dynamics study of the complexation of tryptophan, phenylalanine and tyrosine amino acids with cucurbit[7]uril
    Bodoor, Khaled
    El-Barghouthi, Musa, I
    Assaf, Khaleel, I
    Al Hourani, Baker Jawabrah
    Rawashdeh, Abdel Monem M.
    Abuhasan, Osama M.
    Alhamad, Dima F.
    Abdel-Halim, Hamzeh M.
    JOURNAL OF INCLUSION PHENOMENA AND MACROCYCLIC CHEMISTRY, 2022, 102 (1-2) : 159 - 168
  • [33] A molecular dynamics study of the complexation of tryptophan, phenylalanine and tyrosine amino acids with cucurbit[7]uril
    Khaled Bodoor
    Musa I. El-Barghouthi
    Khaleel I. Assaf
    Baker Jawabrah Al Hourani
    Abdel Monem M. Rawashdeh
    Osama M. Abuhasan
    Dima F. Alhamad
    Hamzeh M. Abdel-Halim
    Journal of Inclusion Phenomena and Macrocyclic Chemistry, 2022, 102 : 159 - 168
  • [34] The supramolecular host-guest complexation of Vemurafenib with β-cyclodextrin and cucurbit[7]uril as drug photoprotecting systems: A DFT/TD-DFT study
    Bani-Yaseen, Abdulilah Dawoud
    COMPUTATIONAL AND THEORETICAL CHEMISTRY, 2020, 1191
  • [35] Supramolecular interaction of a cancer cell photosensitizer in the nanocavity of cucurbit[7]uril: A spectroscopic and calorimetric study
    Ahmed, Sayeed Ashique
    Chatterjee, Aninda
    Maity, Banibrata
    Seth, Debabrata
    INTERNATIONAL JOURNAL OF PHARMACEUTICS, 2015, 492 (1-2) : 103 - 108
  • [36] Supramolecular Controlled Cargo Release via Near Infrared Tunable Cucurbit[7]uril-Gold Nanostars
    Yanwei Han
    Xiran Yang
    Yingzhu Liu
    Qiushuang Ai
    Simin Liu
    Chunyan Sun
    Feng Liang
    Scientific Reports, 6
  • [37] Supramolecular Controlled Cargo Release via Near Infrared Tunable Cucurbit[7]uril-Gold Nanostars
    Han, Yanwei
    Yang, Xiran
    Liu, Yingzhu
    Ai, Qiushuang
    Liu, Simin
    Sun, Chunyan
    Liang, Feng
    SCIENTIFIC REPORTS, 2016, 6
  • [38] Complexation of ferrocene derivatives by the cucurbit[7]uril host: A comparative study of the cucurbituril and cyclodextrin host families
    Jeon, WS
    Moon, K
    Park, SH
    Chun, H
    Ko, YH
    Lee, JY
    Lee, ES
    Samal, S
    Selvapalam, N
    Rekharsky, MV
    Sindelar, V
    Sobransingh, D
    Inoue, Y
    Kaifer, AE
    Kim, K
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2005, 127 (37) : 12984 - 12989
  • [39] Supramolecular complexation with kinetic stabilization: cucurbit[6]uril encapsulated doxorubicin-based prodrugs for pH-responsive controlled release
    Mao, Weipeng
    Wang, Shuyi
    Mao, Dake
    Liu, Yamin
    Li, Libai
    Ma, Da
    NEW JOURNAL OF CHEMISTRY, 2022, 46 (11) : 5355 - 5360
  • [40] Supramolecular Interaction of Coumarin 1 Dye with Cucurbit[7]uril as Host: Combined Experimental and Theoretical Study
    Gupta, Monika
    Maity, Dilip K.
    Singh, Manoj K.
    Nayak, Sandip K.
    Ray, Alok K.
    JOURNAL OF PHYSICAL CHEMISTRY B, 2012, 116 (18): : 5551 - 5558