scRFR: imputation of single-cell RNA-seq data based on recurrent feature inference

被引:0
|
作者
Zhu, Bangyu [1 ]
Zhang, Shaoqiang [1 ]
Li, Lixuan [1 ]
Qian, Zhizhong [1 ]
机构
[1] Tianjin Normal Univ, 393 Extension Bin Shui West Rd, Tianjin, Peoples R China
关键词
Bionformatics; scRNA-seq; dropout; RFR; imputation; Computer vision;
D O I
10.1145/3665689.3665759
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
The area of single-cell RNA sequencing, or scRNA-seq, is expanding quickly and aids in the analysis of expression status. It provides a powerful tool for determining precise expression of tens of thousands of single cells, deciphering cell heterogeneity and cell subsets, etc. Nevertheless, the scRNA-seq data contains a great deal of biological and technical noise, and the associated analysis still has a long way to go. We introduced scRFR, a technique for imputation of scRNA-seq data based on recurrent feature reasoning for Image Inpainting, in order to address "dropout" noise seen in scRNA-seq data. It was discovered through testing that this algorithm has a greater imputation accuracy.
引用
收藏
页码:420 / 424
页数:5
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