The complete chloroplast genome sequence of red raspberry (Rubus idaeus L.) and phylogenetic analysis

被引：1
|
作者：
Zhou, Hao [1 ]
Zhang, Huajie [2 ,3 ,4 ]
机构：
[1] Huazhong Univ Sci & Technol, Coll Life Sci & Technol, Key Lab Mol Biophys, Minist Educ, Wuhan, Peoples R China
[2] Chinese Acad Sci, CAS Key Lab Plant Germplasm Enhancement & Specialt, Wuhan Bot Garden, Wuhan, Hubei, Peoples R China
[3] Chinese Acad Sci, Ctr Conservat Biol, Core Bot Gardens, Wuhan, Hubei, Peoples R China
[4] Univ Chinese Acad Sci, Wuhan Bot Garden, Beijing, Peoples R China
来源：
MITOCHONDRIAL DNA PART B-RESOURCES | 2024年 / 9卷 / 09期
基金：
中国博士后科学基金;
关键词：
Phylogeny; plastome; Rosaceae; Rubus idaeus;
D O I：
10.1080/23802359.2024.2397986
中图分类号：
Q3 [遗传学];
学科分类号：
071007 ; 090102 ;
摘要：
Red raspberries, Rubus idaeus L. 1753 are famous fruits which possess high value bioactive compounds. In this study, we report the complete chloroplast genome of R. idaeus, it displayed a typical quadripartite structure with 155687 bp in length. The genome encodes 127 genes including 79 protein coding genes, 8 rRNA genes and 40 tRNA genes, the overall GC content is 37.2%. Phylogenetic analysis revealed a close relationship between R. idaeus and R. sachalinensis in Section Malaehobatus.
引用
收藏
页码：1152 / 1156
页数：5
相关论文
共 50 条
  • [31] Genetic and Chemical Variability of Wild Red Raspberry (Rubus idaeus L.) Growing in Poland
    Pelc, M.
    Przybyl, J. L.
    Kosakowska, O.
    Szalacha, E.
    Szymborska, I.
    Weglarz, Z.
    IV INTERNATIONAL SYMPOSIUM ON BREEDING RESEARCH ON MEDICINAL AND AROMATIC PLANTS - ISBMAP2009, 2010, 860 : 123 - 127
  • [32] An in vitro test for salt (NaCl) tolerance of red raspberry (Rubus idaeus L.) cultures
    Neocleous, Damianos
    Minas, George John
    PROCEEDINGS OF THE 1ST INTERNATIONAL SYMPOSIUM ON FRESH FOOD QUALITY STANDARDS: BETTER FOOD BY QUALITY AND ASSURANCE, 2006, (741): : 289 - +
  • [33] Development of KASP fingerprinting panel for clonal identification in red raspberry (Rubus idaeus L.)
    Clare, Shaun J.
    King, Ryan M.
    Hardigan, Michael
    Dossett, Michael
    Montanari, Sara
    Chagne, David
    Ochsenfeld, Cherie
    Britton, Caitlin
    Rapp, Ryan
    Bassil, Nahla
    PLANT BREEDING, 2023, 142 (06) : 798 - 808
  • [34] Cryopreservation of red raspberry meristems (Rubus idaeus L.) isolated from in vitro plantlets
    Vysotskaya, ON
    Mochammed, AI
    Butenko, RG
    IZVESTIYA AKADEMII NAUK SERIYA BIOLOGICHESKAYA, 1999, (01): : 25 - 29
  • [35] The chloroplast genome sequence and phylogenetic analysis of Apocynum venetum L.
    Guo, Xiaonong
    Wang, Zhuanxia
    Cai, Deyu
    Song, Lei
    Bai, Jialin
    PLOS ONE, 2022, 17 (03):
  • [36] Complete chloroplast genome sequence and phylogenetic analysis of winter oil rapeseed (Brassica rapa L.)
    Wu, Jun Yan
    Ma, Xue Cai
    Ma, Li
    Fang, Yan
    Zhang, Ya Hong
    Liu, Li Jun
    Li, Xue Cai
    Zeng, Rui
    Sun, Wan Cang
    MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 6 (03): : 723 - 731
  • [37] The complete chloroplast genome sequence of Oroxylum indicum (L.) Kurz (Bignoniaceae) and its phylogenetic analysis
    Jiang, Yuan
    Wang, Jing
    Qian, Jun
    Xu, Li
    Duan, Baozhong
    MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (02): : 1429 - 1430
  • [38] The complete chloroplast genome sequence of Rubus cochinchinensis
    Chen, Yan Zhao
    Guo, Wei
    Wang, Longyuan
    Wu, Wei
    Li, Yongquan
    MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (02): : 1636 - 1637
  • [39] Mineral composition of repair raspberry (Rubus idaeus L.) fruits
    Motyleva, S. M.
    Evdokimenko, S. N.
    Podgaetsky, M. A.
    Tumaeva, T. A.
    Burmenko, Y., V
    Svistunova, N. Y.
    Panischeva, D., V
    Kulikov, I. M.
    VAVILOVSKII ZHURNAL GENETIKI I SELEKTSII, 2022, 26 (07): : 622 - 629
  • [40] Epicuticular wax composition in relation to aphid infestation and resistance in red raspberry (Rubus idaeus L.)
    Shepherd, T
    Robertson, GW
    Griffiths, DW
    Birch, ANE
    PHYTOCHEMISTRY, 1999, 52 (07) : 1239 - 1254
12345